Basic Information
Locus ID:
AsparagusV1_01.10.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
eukaryotic translation initiation factor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 81924 | 87018 | + | AsparagusV1_01.10.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.18 | 6,775.62 Da | 30.86 | 95.87 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01287 | Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold | 5 | 58 | 2.1E-19 | IPR020189 |
| SUPERFAMILY | SSF50249 | Nucleic acid-binding proteins | 4 | 60 | 1.26E-18 | IPR012340 |
| Gene3D | G3DSA:2.40.50.140 | - | 2 | 62 | 1.1E-26 | - |
| SMART | SM01376 | eIF_5a_2 | 3 | 58 | 1.7E-13 | IPR020189 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G69410.1 | eukaryotic elongation factor 5A-3. Encodes eIF5A-2, a putative eukaryotic translation initiation factor. There are three eIF5A coding genes in Arabidopsis: eIF5A-1/At1g13950, eIF5A-2/At1g26630 and eIF5A-3/At1g69410. | 0 |
| RefSeq | XP_022889818.1 | eukaryotic translation initiation factor 5A-2 isoform X2 [Olea europaea var. sylvestris] | 0 |
| P24922 | Eukaryotic translation initiation factor 5A-2 OS=Nicotiana plumbaginifolia OX=4092 GN=EIF-5A2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5P1FPD8 | eIF-5a domain-containing protein OS=Asparagus officinalis OX=4686 GN=A4U43_C01F100 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology