Basic Information
Locus ID:
Ah038645
Species & Taxonomic ID:
Atriplex hortensis & 34272
Genome Assembly:
Atriplex hortensis v2.0
Description:
May participate in a complex which severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Scaffold_291_HRSCAF_384 | 93270861 | 93290620 | + | Ah038645 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.28 | 45,859.24 Da | 41.90 | 83.42 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 53 | 270 | 6.49462E-45 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 231 | 252 | 0.068 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 59 | 94 | 2.9E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 99 | 136 | 6.0E-8 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 142 | 178 | 5.1E-12 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 54 | 304 | 1.65E-49 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 47 | 192 | 4.3E-45 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 193 | 405 | 7.2E-10 | IPR015943 |
| SMART | SM00320 | WD40_4 | 222 | 261 | 1.4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 55 | 94 | 1.5E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 139 | 178 | 5.3E-13 | IPR001680 |
| SMART | SM00320 | WD40_4 | 97 | 136 | 1.6E-9 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 104 | 145 | 14.953072 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 62 | 103 | 14.919653 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 146 | 183 | 14.371031 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 193 | 213 | 9.238559 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 104 | 138 | 11.787407 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 146 | 187 | 18.69591 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 62 | 96 | 11.101955 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 165 | 179 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 191 | 205 | 1.5E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 123 | 137 | 1.5E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 165 | 179 | 1.5E-7 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 363 | 386 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 400 | 418 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 358 | 418 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G08390.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_021773876.1 | katanin p80 WD40 repeat-containing subunit B1 homolog isoform X2 [Chenopodium quinoa] | 0 |
| F4KB17 | Katanin p80 WD40 repeat-containing subunit B1 homolog KTN80.3 OS=Arabidopsis thaliana OX=3702 GN=KTN80.3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803LVX8 | Katanin p80 WD40 repeat-containing subunit B1 homolog OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology