Basic Information
Locus ID:
Ah038624
Species & Taxonomic ID:
Atriplex hortensis & 34272
Genome Assembly:
Atriplex hortensis v2.0
Description:
SNF2 domain-containing protein helicase domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Scaffold_291_HRSCAF_384 | 93054535 | 93079840 | - | Ah038624 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.75 | 121,225.68 Da | 48.56 | 77.78 | -0.56 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18008 | DEXDc_SHPRH-like | 301 | 671 | 1.9338E-77 | - |
| CDD | cd18793 | SF2_C_SNF | 926 | 1038 | 6.32971E-49 | - |
| Pfam | PF00176 | SNF2 family N-terminal domain | 319 | 748 | 1.1E-63 | IPR000330 |
| Pfam | PF13923 | Zinc finger, C3HC4 type (RING finger) | 787 | 823 | 1.2E-8 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 925 | 1029 | 6.1E-13 | IPR001650 |
| SUPERFAMILY | SSF57850 | RING/U-box | 783 | 829 | 2.04E-11 | - |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 288 | 671 | 2.04E-44 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 679 | 1085 | 5.32E-52 | IPR027417 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 777 | 837 | 1.5E-11 | IPR013083 |
| Gene3D | G3DSA:3.40.50.10810 | - | 536 | 682 | 2.0E-30 | IPR038718 |
| Gene3D | G3DSA:3.40.50.300 | - | 686 | 1088 | 9.0E-59 | IPR027417 |
| Gene3D | G3DSA:3.40.50.10810 | - | 273 | 363 | 5.4E-11 | IPR038718 |
| Gene3D | G3DSA:3.40.50.10810 | - | 432 | 522 | 2.0E-10 | IPR038718 |
| SMART | SM00490 | helicmild6 | 938 | 1029 | 1.6E-13 | IPR001650 |
| SMART | SM00184 | ring_2 | 787 | 825 | 0.0044 | IPR001841 |
| SMART | SM00487 | ultradead3 | 297 | 638 | 1.9E-29 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 894 | 1082 | 13.516487 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 453 | 633 | 11.577942 | IPR014001 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 787 | 826 | 11.574592 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 802 | 811 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 165 | 183 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 517 | 545 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 353 | 395 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 115 | 164 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 420 | 452 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 515 | 564 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 74 | 183 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 421 | 445 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G50410.1 | SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related. | 0 |
| RefSeq | XP_021735489.1 | helicase-like transcription factor CHR28 isoform X1 [Chenopodium quinoa] | 0 |
| Q94BR5 | Helicase-like transcription factor CHR28 OS=Arabidopsis thaliana OX=3702 GN=CHR28 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803LS17 | Helicase-like transcription factor CHR28 OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology