Basic Information
Locus ID:
Ah038055
Species & Taxonomic ID:
Atriplex hortensis & 34272
Genome Assembly:
Atriplex hortensis v2.0
Description:
fasciclin-like arabinogalactan protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Scaffold_291_HRSCAF_384 | 84667903 | 84670094 | - | Ah038055 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.45 | 42,103.37 Da | 37.03 | 92.68 | -0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02469 | Fasciclin domain | 195 | 324 | 8.5E-13 | IPR000782 |
| Pfam | PF02469 | Fasciclin domain | 34 | 107 | 1.0E-4 | IPR000782 |
| SUPERFAMILY | SSF82153 | FAS1 domain | 29 | 170 | 5.76E-17 | IPR036378 |
| SUPERFAMILY | SSF82153 | FAS1 domain | 181 | 325 | 5.1E-17 | IPR036378 |
| Gene3D | G3DSA:2.30.180.10 | FAS1 domain | 187 | 325 | 1.9E-9 | IPR036378 |
| Gene3D | G3DSA:2.30.180.10 | FAS1 domain | 23 | 170 | 4.9E-10 | IPR036378 |
| SMART | SM00554 | fasc_3 | 221 | 325 | 1.3E-13 | IPR000782 |
| ProSiteProfiles | PS50213 | FAS1/BIgH3 domain profile. | 23 | 170 | 12.103788 | IPR000782 |
| ProSiteProfiles | PS50213 | FAS1/BIgH3 domain profile. | 183 | 322 | 10.01502 | IPR000782 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 330 | 370 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G12730.1 | FASCICLIN-like arabinogalactan 2. AF333971 Arabidopsis thaliana fasciclin-like arabinogalactan-protein 2 (Fla2) mRNA, complete cds | 0 |
| RefSeq | XP_021766350.1 | fasciclin-like arabinogalactan protein 2 [Chenopodium quinoa] | 0 |
| Q9SU13 | Fasciclin-like arabinogalactan protein 2 OS=Arabidopsis thaliana OX=3702 GN=FLA2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A803MGL8 | Fasciclin-like arabinogalactan protein 2 OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology