Basic Information
Locus ID:
Ah038021
Species & Taxonomic ID:
Atriplex hortensis & 34272
Genome Assembly:
Atriplex hortensis v2.0
Description:
ubiquitin-40S ribosomal protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Scaffold_291_HRSCAF_384 | 84187705 | 84199466 | + | Ah038021 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.84 | 38,317.96 Da | 29.00 | 88.29 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01599 | Ribosomal protein S27a | 11 | 51 | 1.8E-21 | IPR002906 |
| SUPERFAMILY | SSF57829 | Zn-binding ribosomal proteins | 12 | 57 | 1.01E-16 | IPR011332 |
| Gene3D | G3DSA:6.20.50.180 | - | 10 | 73 | 4.4E-24 | - |
| SMART | SM01402 | Ribosomal_S27_2 | 11 | 51 | 9.6E-21 | IPR002906 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 100 | 308 | 1.5E-19 | IPR017451 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G47110.1 | ubiquitin 6. polyubiquitin gene | 0 |
| RefSeq | XP_021736585.1 | F-box/kelch-repeat protein At3g23880-like [Chenopodium quinoa] | 0 |
| P62980 | Ubiquitin-ribosomal protein eS31 fusion protein OS=Solanum lycopersicum OX=4081 GN=UBI3 PE=1 SV=2 | 0 | |
| TrEMBL | A0A803LE81 | Ubiquitin-like domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Atriplex hortensis | 13 | Ah001920, Ah003798, Ah004407, Ah004408, Ah004409, Ah008157 ... |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_9g204180, BVRB_9g219200 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg17163, Sbi_jg27532, Sbi_jg52462, Sbi_jg61771 |
| Amaranthaceae | Salicornia europaea | 3 | Seu_jg20871, Seu_jg423, Seu_jg7781 |
| Amaranthaceae | Suaeda aralocaspica | 11 | GOSA_00000873, GOSA_00000881, GOSA_00011522, GOSA_00011523 ... |
| Amaranthaceae | Suaeda glauca | 22 | Sgl11782, Sgl17271, Sgl24939, Sgl30083, Sgl33301, Sgl38521 ... |
| Amaranthaceae | Chenopodium album | 10 | gene:ENSEOMG00000016276, gene:ENSEOMG00000021311 ... |
| Amaranthaceae | Chenopodium quinoa | 15 | CQ.Regalona.r1.3BG0025960, CQ.Regalona.r1.3BG0025970 ... |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_057782 |