Basic Information
Locus ID:
Ah037988
Species & Taxonomic ID:
Atriplex hortensis & 34272
Genome Assembly:
Atriplex hortensis v2.0
Description:
RING finger and CHY zinc finger domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Scaffold_291_HRSCAF_384 | 83601001 | 83609888 | - | Ah037988 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.00 | 27,911.16 Da | 54.34 | 61.08 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF05495 | CHY zinc finger | 10 | 80 | 1.6E-13 | IPR008913 |
| Pfam | PF14599 | Zinc-ribbon | 182 | 238 | 9.9E-22 | IPR039512 |
| SUPERFAMILY | SSF57850 | RING/U-box | 133 | 182 | 1.82E-7 | - |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 71 | 128 | 8.76E-19 | IPR037275 |
| Gene3D | G3DSA:2.20.28.10 | - | 205 | 241 | 1.1E-15 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 121 | 200 | 3.7E-8 | IPR013083 |
| SMART | SM00184 | ring_2 | 135 | 177 | 3.4E-5 | IPR001841 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 3 | 80 | 18.59342 | IPR008913 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 135 | 177 | 11.102496 | IPR001841 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 70 | 134 | 34.218124 | IPR017921 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G22920.1 | CHY-type/CTCHY-type/RING-type Zinc finger protein. | 0 |
| RefSeq | XP_021724402.1 | E3 ubiquitin-protein ligase RZFP34-like isoform X1 [Chenopodium quinoa] | 0 |
| Q9FFB6 | E3 ubiquitin-protein ligase RZFP34 OS=Arabidopsis thaliana OX=3702 GN=RZPF34 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803MGQ9 | E3 ubiquitin-protein ligase MIEL1-like OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology