Basic Information
Locus ID:
Ah037779
Species & Taxonomic ID:
Atriplex hortensis & 34272
Genome Assembly:
Atriplex hortensis v2.0
Description:
The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Scaffold_291_HRSCAF_384 | 77602709 | 77611367 | + | Ah037779 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.88 | 56,728.69 Da | 60.31 | 84.11 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 257 | 305 | 7.97775E-15 | - |
| Pfam | PF12906 | RING-variant domain | 257 | 304 | 3.3E-10 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 253 | 308 | 8.58E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 241 | 312 | 3.9E-15 | IPR013083 |
| SMART | SM00744 | ringv_2 | 256 | 305 | 4.7E-19 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 249 | 311 | 18.695646 | IPR011016 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 470 | 511 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 470 | 489 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 227 | 247 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 229 | 245 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G60580.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_021745986.1 | uncharacterized protein LOC110711854 [Chenopodium quinoa] | 0 |
| TrEMBL | A0A803M7W5 | RING-CH-type domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology