Basic Information
Locus ID:
Ah037594
Species & Taxonomic ID:
Atriplex hortensis & 34272
Genome Assembly:
Atriplex hortensis v2.0
Description:
WD repeat-containing protein 26-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Scaffold_291_HRSCAF_384 | 70530379 | 70535123 | + | Ah037594 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.10 | 56,641.89 Da | 48.08 | 92.58 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 418 | 456 | 0.02 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 461 | 498 | 3.7E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 253 | 287 | 4.2E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 205 | 241 | 5.1E-7 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 203 | 498 | 1.27E-56 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 330 | 501 | 8.8E-26 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 97 | 329 | 5.0E-31 | IPR015943 |
| SMART | SM00320 | WD40_4 | 248 | 287 | 2.1E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 459 | 499 | 6.0E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 414 | 456 | 0.38 | IPR001680 |
| SMART | SM00320 | WD40_4 | 371 | 410 | 140.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 203 | 242 | 2.2E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 290 | 329 | 24.0 | IPR001680 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 48 | 104 | 8.84642 | IPR006595 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 255 | 292 | 11.65559 | - |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 15 | 47 | 8.756971 | IPR006594 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 466 | 501 | 12.182859 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 255 | 296 | 15.35409 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 210 | 243 | 11.391954 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 210 | 251 | 13.85027 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 466 | 501 | 13.081652 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 229 | 243 | - | IPR019775 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G08560.1 | transducin family protein / WD-40 repeat family protein. | 0 |
| RefSeq | XP_028102142.1 | WD repeat-containing protein 26 homolog [Camellia sinensis] | 0 |
| Q9FNN2 | WD repeat-containing protein 26 homolog OS=Arabidopsis thaliana OX=3702 GN=WDR26 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803LS31 | WD repeat-containing protein 26 OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology