halophFGD

Basic Information

Locus ID: Ah036166

Species & Taxonomic ID: Atriplex hortensis & 34272

Genome Assembly: Atriplex hortensis v2.0

Description: Belongs to the SKP1 family

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
Scaffold_291_HRSCAF_384	7267201	7267380	-	Ah036166

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
4.43	7,009.79 Da	68.51	72.88	-0.75

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF01466	Skp1 family, dimerisation domain	10	57	1.2E-28	IPR016072
SUPERFAMILY	SSF81382	Skp1 dimerisation domain-like	2	57	4.71E-22	IPR036296
Gene3D	G3DSA:3.30.710.10	Potassium Channel Kv1.1; Chain A	1	59	4.2E-29	IPR011333

Gene Ontology

Biological Process:

GO:0006511 (ubiquitin-dependent protein catabolic process)

KEGG Pathway

KO Term:

K03094 (S-phase kinase-associated protein 1)

Pathway:

ko04110 (Cell cycle) map04110 (Cell cycle) ko04111 (Cell cycle - yeast) map04111 (Cell cycle - yeast) ko04114 (Oocyte meiosis) map04114 (Oocyte meiosis) ko04120 (Ubiquitin mediated proteolysis) map04120 (Ubiquitin mediated proteolysis) ko04141 (Protein processing in endoplasmic reticulum) map04141 (Protein processing in endoplasmic reticulum) ko04310 (Wnt signaling pathway) map04310 (Wnt signaling pathway) ko04341 (Hedgehog signaling pathway - fly) map04341 (Hedgehog signaling pathway - fly) ko04350 (TGF-beta signaling pathway) map04350 (TGF-beta signaling pathway) ko04710 (Circadian rhythm)

Best hit

Source	Best Hit ID	Description
TAIR	AT4G34210.1	SKP1-like 11. one of 20 SKP1 homologs in Arabidopsis. Protein is most similar to ASK12 and RNAi lines show defects in stamen development.
RefSeq	XP_015898178.2	SKP1-like protein 1A isoform X1 [Ziziphus jujuba var. spinosa]
Swiss-Prot	O49484	SKP1-like protein 11 OS=Arabidopsis thaliana OX=3702 GN=ASK11 PE=1 SV=1
TrEMBL	A0A5D3CHW3	SKP1-like protein 1A OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold139G00540 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

Family	Species	Count	Orthologous Genes
Amaranthaceae	Atriplex hortensis	1	Ah036166
Plantaginaceae	Plantago ovata	2	Pov_00009782, Pov_00010231