Basic Information
Locus ID:
Ah035998
Species & Taxonomic ID:
Atriplex hortensis & 34272
Genome Assembly:
Atriplex hortensis v2.0
Description:
Ubiquitin receptor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Scaffold_291_HRSCAF_384 | 4132179 | 4140270 | + | Ah035998 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.48 | 35,818.72 Da | 55.03 | 82.70 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01805 | Ubl_Rad23 | 1 | 75 | 3.02214E-16 | - |
| Pfam | PF00240 | Ubiquitin family | 7 | 76 | 6.0E-9 | IPR000626 |
| SUPERFAMILY | SSF101238 | XPC-binding domain | 170 | 228 | 4.58E-5 | IPR036353 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 1 | 77 | 6.22E-13 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 78 | 9.6E-15 | - |
| SMART | SM00213 | ubq_7 | 1 | 76 | 9.6E-7 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 1 | 77 | 12.291423 | IPR000626 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 97 | 118 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 99 | 118 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 133 | 159 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G02540.3 | Rad23 UV excision repair protein family. Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome. | 0 |
| RefSeq | XP_028098649.1 | ubiquitin receptor RAD23c-like isoform X3 [Camellia sinensis] | 0 |
| Q84L31 | Ubiquitin receptor RAD23c OS=Arabidopsis thaliana OX=3702 GN=RAD23C PE=1 SV=2 | 0 | |
| TrEMBL | A0A2U1QC80 | Ubiquitin receptor RAD23 OS=Artemisia annua OX=35608 GN=CTI12_AA049770 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.