Basic Information
Locus ID:
Ah035473
Species & Taxonomic ID:
Atriplex hortensis & 34272
Genome Assembly:
Atriplex hortensis v2.0
Description:
Pentatricopeptide repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Scaffold_1311_HRSCAF_2062 | 92178893 | 92185093 | - | Ah035473 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.18 | 134,468.17 Da | 41.27 | 85.76 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF14432 | DYW family of nucleic acid deaminases | 1053 | 1165 | 5.6E-37 | IPR032867 |
| Pfam | PF01535 | PPR repeat | 886 | 915 | 1.5E-4 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 855 | 883 | 0.03 | IPR002885 |
| Pfam | PF00646 | F-box domain | 12 | 46 | 1.1E-4 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 9 | 52 | 1.23E-10 | IPR036047 |
| SUPERFAMILY | SSF52047 | RNI-like | 151 | 316 | 1.73E-10 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 89 | 368 | 6.8E-10 | IPR032675 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 926 | 1029 | 4.7E-10 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 846 | 925 | 2.8E-16 | IPR011990 |
| Gene3D | G3DSA:1.20.1280.50 | - | 5 | 49 | 1.7E-6 | - |
| SMART | SM00256 | fbox_2 | 15 | 54 | 0.0094 | IPR001810 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 886 | 918 | 7.1E-6 | IPR002885 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 9 | 55 | 10.477762 | IPR001810 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 883 | 917 | 10.829822 | IPR002885 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G25580.1 | Tetratricopeptide repeat (TPR)-like superfamily protein. | 0 |
| RefSeq | XP_021763550.1 | pentatricopeptide repeat-containing protein At4g32450, mitochondrial-like [Chenopodium quinoa] | 0 |
| Q680H3 | Pentatricopeptide repeat-containing protein At2g25580 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H75 PE=2 SV=2 | 0 | |
| TrEMBL | A0A803LAU6 | DYW_deaminase domain-containing protein OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology