Basic Information
Locus ID:
Ah035469
Species & Taxonomic ID:
Atriplex hortensis & 34272
Genome Assembly:
Atriplex hortensis v2.0
Description:
ubiquitin receptor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Scaffold_1311_HRSCAF_2062 | 92149457 | 92156628 | - | Ah035469 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.93 | 53,093.97 Da | 39.46 | 83.26 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01805 | Ubl_Rad23 | 82 | 155 | 6.39486E-29 | - |
| CDD | cd14379 | UBA1_Rad23_plant | 237 | 286 | 1.19866E-31 | - |
| Pfam | PF09280 | XPC-binding domain | 369 | 424 | 2.1E-22 | IPR015360 |
| Pfam | PF00627 | UBA/TS-N domain | 243 | 281 | 1.8E-14 | IPR015940 |
| Pfam | PF00627 | UBA/TS-N domain | 449 | 484 | 1.4E-11 | IPR015940 |
| Pfam | PF00240 | Ubiquitin family | 84 | 157 | 3.8E-18 | IPR000626 |
| SUPERFAMILY | SSF46934 | UBA-like | 430 | 491 | 1.63E-14 | IPR009060 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 82 | 169 | 6.68E-22 | IPR029071 |
| SUPERFAMILY | SSF46934 | UBA-like | 241 | 294 | 8.11E-12 | IPR009060 |
| SUPERFAMILY | SSF101238 | XPC-binding domain | 366 | 430 | 5.89E-22 | IPR036353 |
| Gene3D | G3DSA:1.10.10.540 | - | 359 | 425 | 8.5E-28 | IPR036353 |
| Gene3D | G3DSA:1.10.8.10 | - | 442 | 489 | 1.4E-22 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 236 | 286 | 4.1E-22 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 78 | 161 | 3.9E-27 | - |
| SMART | SM00727 | CBM | 367 | 410 | 1.3E-4 | IPR006636 |
| SMART | SM00165 | uba_6 | 243 | 283 | 6.1E-6 | IPR015940 |
| SMART | SM00165 | uba_6 | 449 | 486 | 4.7E-8 | IPR015940 |
| SMART | SM00213 | ubq_7 | 82 | 156 | 7.1E-19 | IPR000626 |
| TIGRFAM | TIGR00601 | rad23: UV excision repair protein Rad23 | 82 | 491 | 1.4E-109 | IPR004806 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 241 | 284 | 12.811962 | IPR015940 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 82 | 160 | 18.606289 | IPR000626 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 446 | 487 | 13.703554 | IPR015940 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 460 | 474 | 2.5E-32 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 443 | 459 | 2.5E-32 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 395 | 417 | 2.5E-32 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 475 | 490 | 2.5E-32 | IPR004806 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 174 | 201 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G38470.1 | Rad23 UV excision repair protein family. Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome. | 0 |
| RefSeq | XP_021763544.1 | ubiquitin receptor RAD23d-like [Chenopodium quinoa] | 0 |
| Q84L30 | Ubiquitin receptor RAD23d OS=Arabidopsis thaliana OX=3702 GN=RAD23D PE=1 SV=2 | 0 | |
| TrEMBL | A0A803LAU3 | Ubiquitin receptor RAD23 OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology