Basic Information
Locus ID:
Ah035145
Species & Taxonomic ID:
Atriplex hortensis & 34272
Genome Assembly:
Atriplex hortensis v2.0
Description:
E3 ubiquitin-protein ligase RING1-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Scaffold_1311_HRSCAF_2062 | 89118484 | 89123932 | - | Ah035145 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.52 | 54,408.30 Da | 77.70 | 77.47 | -0.44 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16667 | RING-H2_RNF126_like | 219 | 260 | 2.0323E-24 | - |
| Pfam | PF14369 | zinc-ribbon | 13 | 50 | 5.4E-14 | IPR039525 |
| Pfam | PF13923 | Zinc finger, C3HC4 type (RING finger) | 218 | 259 | 8.6E-10 | - |
| Pfam | PF06547 | Protein of unknown function (DUF1117) | 316 | 382 | 6.8E-31 | IPR010543 |
| SUPERFAMILY | SSF57850 | RING/U-box | 199 | 266 | 1.21E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 185 | 266 | 5.5E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 219 | 259 | 2.2E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 219 | 260 | 12.120453 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 88 | 104 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 88 | 124 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G39720.1 | RING-H2 finger C2A. Encodes a putative RING-H2 finger protein RHC2a. | 0 |
| RefSeq | XP_021769028.1 | probable E3 ubiquitin-protein ligase RHC2A [Chenopodium quinoa] | 0 |
| O22283 | Probable E3 ubiquitin-protein ligase RHC2A OS=Arabidopsis thaliana OX=3702 GN=RHC2A PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9QPG2 | RING-type E3 ubiquitin transferase OS=Spinacia oleracea OX=3562 GN=SOVF_156260 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology