Basic Information
Locus ID:
Ah035136
Species & Taxonomic ID:
Atriplex hortensis & 34272
Genome Assembly:
Atriplex hortensis v2.0
Description:
FIZZY-related
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Scaffold_1311_HRSCAF_2062 | 88960036 | 88976584 | - | Ah035136 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.57 | 55,628.79 Da | 45.74 | 72.66 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 210 | 486 | 1.14242E-42 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 450 | 486 | 5.8E-5 | IPR001680 |
| Pfam | PF12894 | Anaphase-promoting complex subunit 4 WD40 domain | 317 | 379 | 1.8E-5 | IPR024977 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 187 | 487 | 4.67E-63 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 146 | 488 | 6.6E-124 | IPR015943 |
| SMART | SM00320 | WD40_4 | 276 | 313 | 0.073 | IPR001680 |
| SMART | SM00320 | WD40_4 | 233 | 273 | 0.036 | IPR001680 |
| SMART | SM00320 | WD40_4 | 317 | 356 | 1.5E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 189 | 230 | 100.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 359 | 401 | 2.3E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 404 | 444 | 120.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 447 | 486 | 4.1E-8 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 366 | 410 | 8.971213 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 454 | 487 | 11.73468 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 324 | 365 | 13.716598 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 241 | 282 | 8.770704 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 454 | 487 | 14.184453 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 324 | 356 | 10.864685 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 473 | 487 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 388 | 402 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 12 | 53 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 53 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 92 | 112 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 171 | 191 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 92 | 109 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G13840.1 | FIZZY-related 3. | 0 |
| RefSeq | XP_021769011.1 | protein FIZZY-RELATED 3-like [Chenopodium quinoa] | 0 |
| A0A396ISC0 | B-type cell cycle switch protein ccs52B OS=Medicago truncatula OX=3880 GN=CCS52B PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9S028 | WD_REPEATS_REGION domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_009880 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology