Basic Information
Locus ID:
Ah035065
Species & Taxonomic ID:
Atriplex hortensis & 34272
Genome Assembly:
Atriplex hortensis v2.0
Description:
PolyA polymerase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Scaffold_1311_HRSCAF_2062 | 88237850 | 88249066 | - | Ah035065 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.29 | 92,086.32 Da | 47.51 | 81.36 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05402 | NT_PAP_TUTase | 122 | 244 | 2.08588E-25 | - |
| Pfam | PF01909 | Nucleotidyltransferase domain | 123 | 193 | 1.7E-8 | IPR002934 |
| Pfam | PF04926 | Poly(A) polymerase predicted RNA binding domain | 456 | 530 | 1.2E-7 | IPR007010 |
| Pfam | PF04926 | Poly(A) polymerase predicted RNA binding domain | 397 | 454 | 9.4E-11 | IPR007010 |
| Pfam | PF04928 | Poly(A) polymerase central domain | 22 | 394 | 9.5E-103 | IPR007012 |
| SUPERFAMILY | SSF81301 | Nucleotidyltransferase | 100 | 243 | 1.26E-39 | IPR043519 |
| SUPERFAMILY | SSF81631 | PAP/OAS1 substrate-binding domain | 245 | 394 | 3.66E-64 | - |
| SUPERFAMILY | SSF55003 | PAP/Archaeal CCA-adding enzyme, C-terminal domain | 395 | 523 | 4.32E-37 | IPR011068 |
| Gene3D | G3DSA:3.30.460.10 | Beta Polymerase, domain 2 | 54 | 71 | 4.6E-6 | IPR043519 |
| Gene3D | G3DSA:3.30.460.10 | Beta Polymerase, domain 2 | 100 | 238 | 1.2E-139 | IPR043519 |
| Gene3D | G3DSA:1.10.1410.10 | - | 239 | 392 | 1.2E-139 | - |
| Gene3D | G3DSA:1.10.1410.10 | - | 22 | 53 | 4.6E-6 | - |
| Gene3D | G3DSA:3.30.70.590 | Poly(A) polymerase predicted RNA binding domain | 396 | 512 | 4.4E-27 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 552 | 570 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 547 | 582 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G32850.7 | nuclear poly(a) polymerase. Encodes a nuclear poly(A) polymerase. Located in the nucleus. | 0 |
| RefSeq | XP_021776422.1 | LOW QUALITY PROTEIN: nuclear poly(A) polymerase 4-like [Chenopodium quinoa] | 0 |
| Q8VYW1 | Nuclear poly(A) polymerase 4 OS=Arabidopsis thaliana OX=3702 GN=PAPS4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803N4A6 | polynucleotide adenylyltransferase OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology