halophFGD

Basic Information

Locus ID: Ah034904

Species & Taxonomic ID: Atriplex hortensis & 34272

Genome Assembly: Atriplex hortensis v2.0

Description: Pentatricopeptide repeat-containing protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
Scaffold_1311_HRSCAF_2062	86262189	86269540	+	Ah034904

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
8.03	68,898.66 Da	40.57	79.36	-0.26

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF13041	PPR repeat family	126	173	2.0E-15	IPR002885
Pfam	PF13041	PPR repeat family	232	281	1.4E-10	IPR002885
Pfam	PF17177	Pentacotripeptide-repeat region of PRORP	392	515	1.6E-11	IPR033443
Pfam	PF13812	Pentatricopeptide repeat domain	65	102	0.0061	IPR002885
Pfam	PF13041	PPR repeat family	337	386	1.1E-9	IPR002885
Pfam	PF01535	PPR repeat	305	335	0.67	IPR002885
Pfam	PF01535	PPR repeat	201	230	0.014	IPR002885
SUPERFAMILY	SSF81901	HCP-like	136	294	3.14E-8	-
Gene3D	G3DSA:1.25.40.10	Tetratricopeptide repeat domain	194	264	8.4E-18	IPR011990
Gene3D	G3DSA:1.25.40.10	Tetratricopeptide repeat domain	355	540	2.4E-38	IPR011990
Gene3D	G3DSA:1.25.40.10	Tetratricopeptide repeat domain	272	353	5.5E-17	IPR011990
Gene3D	G3DSA:1.25.40.10	Tetratricopeptide repeat domain	60	193	1.4E-30	IPR011990
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	62	92	0.0017	IPR002885
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	305	339	1.1E-4	IPR002885
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	340	374	7.6E-5	IPR002885
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	235	269	3.0E-7	IPR002885
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	277	303	3.3E-4	IPR002885
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	165	195	6.4E-6	IPR002885
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	376	409	2.0E-5	IPR002885
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	201	234	1.4E-6	IPR002885
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	131	162	2.0E-7	IPR002885
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	410	443	2.4E-7	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	162	196	10.753093	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	373	407	11.32308	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	198	232	12.013642	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	443	477	10.226951	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	408	442	11.257313	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	338	372	10.939435	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	303	337	9.667924	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	233	267	11.695765	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	268	302	9.96388	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	127	161	12.791895	IPR002885
MobiDBLite	mobidb-lite	consensus disorder prediction	505	529	-	-

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

KEGG Pathway

KO Term:

K17710 (pentatricopeptide repeat domain-containing protein 1)

Best hit

Source	Best Hit ID	Description
TAIR	AT5G25630.1	Tetratricopeptide repeat (TPR)-like superfamily protein.
RefSeq	XP_021735533.1	pentatricopeptide repeat-containing protein At5g25630-like [Chenopodium quinoa]
Swiss-Prot	Q8GZ63	Pentatricopeptide repeat-containing protein At5g25630 OS=Arabidopsis thaliana OX=3702 GN=At5g25630 PE=2 SV=2
TrEMBL	A0A803LBU2	PPR_long domain-containing protein OS=Chenopodium quinoa OX=63459 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	2	jg3824, jg7860
Aizoaceae	Mesembryanthemum crystallinum	2	gene_10714, gene_8166
Amaranthaceae	Atriplex hortensis	2	Ah014544, Ah034904
Amaranthaceae	Beta vulgaris	4	BVRB_2g031840, BVRB_8g196490, BVRB_8g196500, BVRB_8g196530
Amaranthaceae	Salicornia bigelovii	4	Sbi_jg21000, Sbi_jg22782, Sbi_jg24975, Sbi_jg8835
Amaranthaceae	Salicornia europaea	2	Seu_jg16657, Seu_jg19774
Amaranthaceae	Suaeda aralocaspica	1	GOSA_00007807
Amaranthaceae	Suaeda glauca	5	Sgl42210, Sgl46980, Sgl54062, Sgl62458, Sgl67003
Amaranthaceae	Chenopodium album	6	gene:ENSEOMG00000010687, gene:ENSEOMG00000018396 ... gene:ENSEOMG00000019210, gene:ENSEOMG00000032878, gene:ENSEOMG00000047297, gene:ENSEOMG00000050856
Amaranthaceae	Chenopodium quinoa	4	CQ.Regalona.r1.2AG0016360, CQ.Regalona.r1.2BG0018130 ... CQ.Regalona.r1.8AG0020160, CQ.Regalona.r1.8BG0022280
Anacardiaceae	Pistacia vera	2	pistato.v30253400, pistato.v30256590
Apiaceae	Apium graveolens	2	Ag10G01538, Ag7G00293
Arecaceae	Cocos nucifera	1	COCNU_03G012070
Arecaceae	Phoenix dactylifera	1	gene-LOC103710907
Asparagaceae	Asparagus officinalis	3	AsparagusV1_01.1546.V1.1, AsparagusV1_07.2392.V1.1 ... AsparagusV1_07.417.V1.1
Asteraceae	Flaveria trinervia	1	Ftri3G24253
Brassicaceae	Arabidopsis thaliana	2	AT5G21222.1, AT5G25630.2
Brassicaceae	Eutrema salsugineum	2	Thhalv10003915m.g.v1.0, Thhalv10012659m.g.v1.0
Brassicaceae	Schrenkiella parvula	2	Sp2g21900.v2.2, Sp6g23340.v2.2
Brassicaceae	Brassica nigra	3	BniB02g041700.2N, BniB07g025020.2N, BniB07g039680.2N
Casuarinaceae	Casuarina equisetifolia	2	Ceq04G2119, Ceq06G1498
Casuarinaceae	Casuarina glauca	3	Cgl04G2313, Cgl04G2324, Cgl06G1553
Cymodoceaceae	Cymodocea nodosa	3	gene.Cymno02g12490, gene.Cymno02g13330, gene.Cymno12g02340
Hydrocharitaceae	Thalassia testudinum	1	gene.Thate09g15860
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG07.1088, evm.TU.LG07.775
Plantaginaceae	Plantago ovata	1	Pov_00003850
Plumbaginaceae	Limonium bicolor	2	Lb7G34995, Lb7G35002
Poaceae	Echinochloa crus-galli	3	AH06.2290, BH07.3959, CH06.2313
Poaceae	Eleusine coracana subsp. coracana	2	gene-QOZ80_6AG0521710, gene-QOZ80_6BG0474830
Poaceae	Hordeum vulgare	1	HORVU.MOREX.r3.3HG0248630.1
Poaceae	Lolium multiflorum	2	gene-QYE76_051474, gene-QYE76_051482
Poaceae	Oryza coarctata	2	Oco01G005680, Oco02G005770
Poaceae	Paspalum vaginatum	1	gene-BS78_10G191200
Poaceae	Puccinellia tenuiflora	2	Pt_Chr0204886, Pt_Chr0205057
Poaceae	Sporobolus alterniflorus	3	Chr07G014820, Chr21G007420, Chr31G007880
Poaceae	Thinopyrum elongatum	1	Tel3E01G276300
Poaceae	Triticum dicoccoides	2	gene_TRIDC3AG020600, gene_TRIDC3BG030970
Poaceae	Triticum aestivum	3	TraesCS3A02G153300.1, TraesCS3B02G179900.1 ... TraesCS3D02G160600.2
Poaceae	Zea mays	1	Zm00001eb315460_P002
Poaceae	Zoysia macrostachya	1	Zma_g29714
Portulacaceae	Portulaca oleracea	4	evm.TU.LG02.2875, evm.TU.LG05.2345, evm.TU.LG07.1110 ... evm.TU.LG23.1077
Posidoniaceae	Posidonia oceanica	2	gene.Posoc08g13310, gene.Posoc09g07670
Rhizophoraceae	Bruguiera sexangula	3	evm.TU.60417.2, evm.TU.60418.2 ... evm.TU.Scaffold_4_RagTag.1207
Rhizophoraceae	Carallia pectinifolia	1	nbisL1-mrna-25631
Rhizophoraceae	Ceriops tagal	1	nbisL1-mrna-14993
Rhizophoraceae	Ceriops zippeliana	1	nbisL1-mrna-4712
Rhizophoraceae	Kandelia candel	1	evm.TU.utg000008l.1113
Rhizophoraceae	Kandelia obovata	1	Maker00001456
Rhizophoraceae	Rhizophora apiculata	2	nbisL1-mrna-14184, nbisL1-mrna-9731
Rhizophoraceae	Rhizophora mangle	2	nbisL1-mrna-21067, nbisL1-mrna-996
Salicaceae	Populus euphratica	4	populus_peu04868, populus_peu12782, populus_peu21928 ... populus_peu38110
Solanaceae	Lycium barbarum	2	gene-LOC132603462, gene-LOC132635663
Solanaceae	Solanum chilense	2	SOLCI000411300, SOLCI005497300
Solanaceae	Solanum pennellii	2	gene-LOC107026118, gene-LOC107028521
Tamaricaceae	Reaumuria soongarica	2	STRG.32841_chr09_-, STRG.3917_chr02_+
Tamaricaceae	Tamarix chinensis	2	TC02G0334, TC12G1292
Zosteraceae	Zostera marina	1	Zosma05g13580.v3.1