Basic Information
Locus ID:
Ah034825
Species & Taxonomic ID:
Atriplex hortensis & 34272
Genome Assembly:
Atriplex hortensis v2.0
Description:
CCR4-associated factor 1 homolog
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Scaffold_1311_HRSCAF_2062 | 85201420 | 85202223 | - | Ah034825 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.46 | 26,930.20 Da | 28.46 | 87.55 | -0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04857 | CAF1 family ribonuclease | 13 | 134 | 3.6E-11 | IPR006941 |
| SUPERFAMILY | SSF53098 | Ribonuclease H-like | 10 | 233 | 2.28E-73 | IPR012337 |
| Gene3D | G3DSA:3.30.420.10 | - | 1 | 188 | 8.9E-70 | IPR036397 |
| Gene3D | G3DSA:3.30.420.10 | - | 189 | 237 | 3.2E-9 | IPR036397 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32070.1 | Polynucleotidyl transferase, ribonuclease H-like superfamily protein. | 0 |
| RefSeq | XP_021739492.1 | probable CCR4-associated factor 1 homolog 7 [Chenopodium quinoa] | 0 |
| Q9SKZ2 | Probable CCR4-associated factor 1 homolog 7 OS=Arabidopsis thaliana OX=3702 GN=CAF1-7 PE=2 SV=2 | 0 | |
| TrEMBL | A0A0K9RG22 | poly(A)-specific ribonuclease OS=Spinacia oleracea OX=3562 GN=SOVF_075480 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology