Basic Information
Locus ID:
Ah034786
Species & Taxonomic ID:
Atriplex hortensis & 34272
Genome Assembly:
Atriplex hortensis v2.0
Description:
Zinc finger, C3HC4 type (RING finger)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Scaffold_1311_HRSCAF_2062 | 84709107 | 84710060 | - | Ah034786 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.96 | 34,038.70 Da | 48.74 | 80.74 | -0.53 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 245 | 288 | 1.2E-10 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 227 | 291 | 1.85E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 203 | 292 | 5.0E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 246 | 287 | 8.4E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 246 | 288 | 12.474524 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G41450.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_010667193.1 | uncharacterized protein LOC104884266 [Beta vulgaris subsp. vulgaris] | 0 |
| Q6AY01 | E3 ubiquitin-protein ligase RNF133 OS=Rattus norvegicus OX=10116 GN=Rnf133 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0J8B1Y8 | RING-type domain-containing protein OS=Beta vulgaris subsp. vulgaris OX=3555 GN=BVRB_012910 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_17899 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah034786 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_2g030790 |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000020651 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.1BG0021620, CQ.Regalona.r1.2AG0023350 |