Basic Information
Locus ID:
Ah034772
Species & Taxonomic ID:
Atriplex hortensis & 34272
Genome Assembly:
Atriplex hortensis v2.0
Description:
Synaptotagmin-like mitochondrial-lipid-binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Scaffold_1311_HRSCAF_2062 | 84584285 | 84593272 | + | Ah034772 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.73 | 63,204.90 Da | 31.97 | 105.60 | -0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00030 | C2 | 267 | 369 | 1.06891E-24 | - |
| CDD | cd00030 | C2 | 445 | 532 | 2.02512E-20 | - |
| Pfam | PF17047 | Synaptotagmin-like mitochondrial-lipid-binding domain | 69 | 248 | 6.3E-17 | IPR039010 |
| Pfam | PF00168 | C2 domain | 265 | 369 | 1.5E-22 | IPR000008 |
| Pfam | PF00168 | C2 domain | 443 | 510 | 1.6E-18 | IPR000008 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 263 | 394 | 7.74E-29 | IPR035892 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 441 | 553 | 3.13E-25 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 261 | 404 | 2.4E-31 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 425 | 552 | 5.4E-25 | IPR035892 |
| SMART | SM00239 | C2_3c | 444 | 533 | 1.4E-14 | IPR000008 |
| SMART | SM00239 | C2_3c | 266 | 366 | 1.7E-21 | IPR000008 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 243 | 367 | 20.26465 | IPR000008 |
| ProSiteProfiles | PS51847 | Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. | 67 | 249 | 30.32156 | IPR031468 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 424 | 546 | 17.225122 | IPR000008 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G05500.1 | Calcium-dependent lipid-binding (CaLB domain) family protein. Encodes a endomembrane-localized synaptotagmin. Synaptotagmin family proteins are calcium sensors that regulate exocytosis in mammalian cells. | 0 |
| RefSeq | XP_021769371.1 | synaptotagmin-5-like isoform X1 [Chenopodium quinoa] | 0 |
| A0JJX5 | Synaptotagmin-4 OS=Arabidopsis thaliana OX=3702 GN=SYT4 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9RI35 | Synaptotagmin-5 (Fragment) OS=Spinacia oleracea OX=3562 GN=SOVF_064340 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology