Basic Information
Locus ID:
Ah034745
Species & Taxonomic ID:
Atriplex hortensis & 34272
Genome Assembly:
Atriplex hortensis v2.0
Description:
F-Box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Scaffold_1311_HRSCAF_2062 | 84342417 | 84343613 | + | Ah034745 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.50 | 46,012.49 Da | 34.60 | 81.76 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08268 | F-box associated domain | 252 | 320 | 1.3E-5 | IPR013187 |
| SUPERFAMILY | SSF81383 | F-box domain | 13 | 77 | 1.31E-9 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 22 | 61 | 5.8E-6 | - |
| SMART | SM00256 | fbox_2 | 24 | 64 | 2.0E-4 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 146 | 363 | 4.4E-20 | IPR017451 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G49610.1 | F-box family protein. | 0 |
| RefSeq | XP_021738215.1 | F-box protein At5g18160-like [Chenopodium quinoa] | 0 |
| Q9FGY4 | F-box protein At5g49610 OS=Arabidopsis thaliana OX=3702 GN=At5g49610 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9QKZ8 | F-box domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_167380 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg15083, jg15255, jg3735 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_17879 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah034745 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_2g030430 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg21164, Sbi_jg22640 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg16526 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00016279 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl62317, Sgl67167 |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.1BG0021110 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp4g22180.v2.2, Sp5g30880.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB06g048830.2N |
| Plantaginaceae | Plantago ovata | 5 | Pov_00001674, Pov_00005518, Pov_00005519, Pov_00005520 ... |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG10.785, evm.TU.LG17.784 |
| Salicaceae | Populus euphratica | 1 | populus_peu19120 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132612212 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107029230 |