Basic Information
Locus ID:
Ah034500
Species & Taxonomic ID:
Atriplex hortensis & 34272
Genome Assembly:
Atriplex hortensis v2.0
Description:
Belongs to the DEAD box helicase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Scaffold_1311_HRSCAF_2062 | 81546462 | 81558608 | - | Ah034500 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.97 | 91,984.60 Da | 40.49 | 94.07 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18787 | SF2_C_DEAD | 653 | 783 | 2.12935E-57 | - |
| CDD | cd17939 | DEADc_EIF4A | 69 | 266 | 2.14153E-127 | - |
| CDD | cd17939 | DEADc_EIF4A | 459 | 642 | 4.73801E-115 | - |
| CDD | cd18787 | SF2_C_DEAD | 277 | 407 | 3.19182E-57 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 290 | 398 | 3.7E-28 | IPR001650 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 465 | 626 | 2.8E-40 | IPR011545 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 666 | 774 | 3.0E-28 | IPR001650 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 89 | 250 | 3.1E-41 | IPR011545 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 509 | 794 | 5.73E-74 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 133 | 418 | 2.7E-74 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 54 | 272 | 3.9E-67 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 452 | 648 | 9.5E-61 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 649 | 813 | 8.5E-58 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 273 | 435 | 6.9E-57 | IPR027417 |
| SMART | SM00490 | helicmild6 | 693 | 774 | 2.0E-31 | IPR001650 |
| SMART | SM00490 | helicmild6 | 317 | 398 | 3.1E-31 | IPR001650 |
| SMART | SM00487 | ultradead3 | 459 | 656 | 1.7E-57 | IPR014001 |
| SMART | SM00487 | ultradead3 | 83 | 280 | 3.3E-57 | IPR014001 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 471 | 641 | 29.867989 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 276 | 437 | 24.794827 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 95 | 265 | 29.710802 | IPR014001 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 64 | 92 | 10.417066 | IPR014014 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 652 | 813 | 25.556675 | IPR001650 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 587 | 595 | - | IPR000629 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 211 | 219 | - | IPR000629 |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13920.1 | eukaryotic translation initiation factor 4A1. eukaryotic translation initiation factor 4A-1 | 0 |
| RefSeq | XP_028074210.1 | eukaryotic initiation factor 4A-15-like isoform X3 [Camellia sinensis] | 0 |
| Q40471 | Eukaryotic initiation factor 4A-9 OS=Nicotiana tabacum OX=4097 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2G3B4B1 | Eukaryotic initiation factor 4A-11 OS=Capsicum chinense OX=80379 GN=BC332_31105 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology