Basic Information
Locus ID:
Ah034082
Species & Taxonomic ID:
Atriplex hortensis & 34272
Genome Assembly:
Atriplex hortensis v2.0
Description:
F-box LRR-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Scaffold_1311_HRSCAF_2062 | 74157258 | 74159001 | + | Ah034082 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.31 | 39,025.07 Da | 44.44 | 96.24 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 73 | 108 | 3.4E-4 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 70 | 113 | 1.27E-5 | IPR036047 |
| SUPERFAMILY | SSF52047 | RNI-like | 175 | 284 | 1.6E-7 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 136 | 328 | 7.4E-10 | IPR032675 |
| Gene3D | G3DSA:1.20.1280.50 | - | 73 | 112 | 5.2E-6 | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G48880.1 | RNI-like superfamily protein. | 0 |
| RefSeq | XP_021759699.1 | F-box/LRR-repeat protein At3g48880-like [Chenopodium quinoa] | 0 |
| Q9M2Z5 | F-box/LRR-repeat protein At3g48880 OS=Arabidopsis thaliana OX=3702 GN=At3g48880 PE=2 SV=1 | 0 | |
| TrEMBL | A0A803LK07 | F-box domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 3 | gene_12150, gene_4483, gene_7164 |
| Amaranthaceae | Atriplex hortensis | 9 | Ah004682, Ah016056, Ah032331, Ah032336, Ah034082, Ah034094 ... |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_1g000880, BVRB_9g216740 |
| Amaranthaceae | Salicornia bigelovii | 13 | Sbi_jg40828, Sbi_jg40829, Sbi_jg61155, Sbi_jg61156 ... |
| Amaranthaceae | Salicornia europaea | 3 | Seu_jg22918, Seu_jg22926, Seu_jg22927 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00022496 |
| Amaranthaceae | Suaeda glauca | 9 | Sgl23009, Sgl28119, Sgl32537, Sgl37813, Sgl70843, Sgl70846 ... |
| Amaranthaceae | Chenopodium album | 16 | gene:ENSEOMG00000011497, gene:ENSEOMG00000016296 ... |
| Amaranthaceae | Chenopodium quinoa | 12 | CQ.Regalona.r1.1BG0002070, CQ.Regalona.r1.2BG0007820 ... |
| Salicaceae | Populus euphratica | 1 | populus_peu30353 |