Basic Information
Locus ID:
Ah032964
Species & Taxonomic ID:
Atriplex hortensis & 34272
Genome Assembly:
Atriplex hortensis v2.0
Description:
F-box LRR-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Scaffold_1311_HRSCAF_2062 | 27172037 | 27172300 | + | Ah032964 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 10.01 | 10,102.74 Da | 74.17 | 109.77 | 0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 20 | 55 | 1.0E-5 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 14 | 57 | 1.01E-12 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 5 | 82 | 6.1E-8 | - |
| SMART | SM00256 | fbox_2 | 21 | 61 | 0.0018 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 15 | 63 | 9.100053 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G00160.1 | F-box/RNI-like/FBD-like domains-containing protein. | 0 |
| RefSeq | XP_021776068.1 | F-box/LRR-repeat protein At3g26922-like [Chenopodium quinoa] | 0 |
| Q8LF09 | F-box/FBD/LRR-repeat protein At4g00160 OS=Arabidopsis thaliana OX=3702 GN=At4g00160 PE=2 SV=2 | 0 | |
| TrEMBL | A0A803MWF3 | F-box domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Atriplex hortensis | 3 | Ah002911, Ah032964, Ah032965 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000000086, gene:ENSEOMG00000010796 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.5AG0012020, CQ.Regalona.r1.8BG0010370 ... |