Basic Information
Locus ID:
Ah032174
Species & Taxonomic ID:
Atriplex hortensis & 34272
Genome Assembly:
Atriplex hortensis v2.0
Description:
Autophagy-related protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Scaffold_1311_HRSCAF_2062 | 6564075 | 6567410 | - | Ah032174 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.51 | 43,080.18 Da | 49.62 | 84.82 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 50 | 293 | 7.88E-31 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 36 | 320 | 5.2E-17 | IPR015943 |
| SMART | SM00320 | WD40_4 | 250 | 291 | 0.19 | IPR001680 |
| SMART | SM00320 | WD40_4 | 125 | 160 | 280.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 35 | 73 | 410.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 207 | 247 | 0.09 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 21 | 42 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G56440.2 | - | 0 |
| RefSeq | XP_021762313.1 | autophagy-related protein 18d-like isoform X1 [Chenopodium quinoa] | 0 |
| Q0WPK3 | Autophagy-related protein 18d OS=Arabidopsis thaliana OX=3702 GN=ATG18D PE=2 SV=1 | 0 | |
| TrEMBL | A0A803ML50 | Autophagy-related protein 18d OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology