Basic Information
Locus ID:
Ah031884
Species & Taxonomic ID:
Atriplex hortensis & 34272
Genome Assembly:
Atriplex hortensis v2.0
Description:
RING finger and CHY zinc finger domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Scaffold_1311_HRSCAF_2062 | 3041440 | 3051407 | - | Ah031884 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.37 | 40,288.27 Da | 45.66 | 63.22 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 239 | 282 | 7.9E-8 | IPR001841 |
| Pfam | PF14599 | Zinc-ribbon | 287 | 345 | 4.9E-25 | IPR039512 |
| Pfam | PF05495 | CHY zinc finger | 104 | 185 | 2.8E-19 | IPR008913 |
| SUPERFAMILY | SSF57850 | RING/U-box | 239 | 288 | 3.85E-9 | - |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 101 | 175 | 7.32E-17 | IPR037274 |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 176 | 233 | 4.32E-19 | IPR037275 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 234 | 285 | 3.7E-10 | IPR013083 |
| Gene3D | G3DSA:2.20.28.10 | - | 311 | 348 | 3.0E-17 | - |
| SMART | SM00184 | ring_2 | 240 | 282 | 1.0E-6 | IPR001841 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 175 | 239 | 34.196404 | IPR017921 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 97 | 173 | 25.102921 | IPR008913 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 240 | 283 | 12.031935 | IPR001841 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G25560.1 | CHY-type/CTCHY-type/RING-type Zinc finger protein. | 0 |
| RefSeq | XP_021746278.1 | probable E3 ubiquitin-protein ligase RZFP34 [Chenopodium quinoa] | 0 |
| Q5JL96 | Probable E3 ubiquitin-protein ligase RZFP34 OS=Oryza sativa subsp. japonica OX=39947 GN=RZFP34 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9QPK0 | RING finger and CHY zinc finger domain-containing protein 1 OS=Spinacia oleracea OX=3562 GN=SOVF_155740 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology