Basic Information
Locus ID:
Ah031706
Species & Taxonomic ID:
Atriplex hortensis & 34272
Genome Assembly:
Atriplex hortensis v2.0
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Scaffold_1311_HRSCAF_2062 | 1033955 | 1037497 | + | Ah031706 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.25 | 68,475.93 Da | 40.59 | 90.19 | -0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 527 | 572 | 7.8E-11 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 519 | 578 | 1.56E-17 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 492 | 577 | 2.3E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 528 | 571 | 8.2E-7 | IPR001841 |
| SMART | SM00184 | ring_2 | 256 | 312 | 5.4 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 528 | 572 | 13.049892 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G57730.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_021757917.1 | E3 ubiquitin-protein ligase SDIR1-like [Chenopodium quinoa] | 0 |
| TrEMBL | A0A803N681 | RING-type domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.