Basic Information
Locus ID:
Ah031705
Species & Taxonomic ID:
Atriplex hortensis & 34272
Genome Assembly:
Atriplex hortensis v2.0
Description:
finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Scaffold_1311_HRSCAF_2062 | 1031399 | 1033417 | + | Ah031705 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.14 | 37,262.26 Da | 31.96 | 87.24 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12678 | RING-H2 zinc finger domain | 247 | 301 | 4.9E-9 | IPR024766 |
| SUPERFAMILY | SSF57850 | RING/U-box | 237 | 307 | 2.62E-16 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 213 | 306 | 1.7E-14 | IPR013083 |
| SMART | SM01197 | FANCL_C_2 | 245 | 309 | 0.0055 | - |
| SMART | SM00184 | ring_2 | 249 | 300 | 1.3E-4 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 249 | 301 | 12.002429 | IPR001841 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 249 | 300 | - | IPR019786 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G57730.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_021757917.1 | E3 ubiquitin-protein ligase SDIR1-like [Chenopodium quinoa] | 0 |
| TrEMBL | A0A803N681 | RING-type domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.