Basic Information
Locus ID:
Ah031699
Species & Taxonomic ID:
Atriplex hortensis & 34272
Genome Assembly:
Atriplex hortensis v2.0
Description:
Ubiquitin carboxyl-terminal hydrolase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Scaffold_1311_HRSCAF_2062 | 967334 | 976260 | - | Ah031699 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.25 | 85,409.05 Da | 48.09 | 72.53 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02661 | Peptidase_C19E | 168 | 453 | 3.07139E-142 | - |
| Pfam | PF01753 | MYND finger | 80 | 117 | 3.5E-10 | IPR002893 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 169 | 453 | 1.2E-40 | IPR001394 |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 76 | 119 | 1.74E-11 | - |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 165 | 459 | 3.53E-79 | IPR038765 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 160 | 470 | 1.4E-83 | - |
| Gene3D | G3DSA:6.10.140.2220 | - | 69 | 123 | 4.8E-14 | - |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 169 | 479 | 43.836979 | IPR028889 |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 80 | 117 | 12.060699 | IPR002893 |
| ProSitePatterns | PS01360 | Zinc finger MYND-type signature. | 80 | 117 | - | IPR002893 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 170 | 185 | - | IPR018200 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G24640.1 | ubiquitin-specific protease 19. | 0 |
| RefSeq | XP_021762112.1 | ubiquitin carboxyl-terminal hydrolase 18-like [Chenopodium quinoa] | 0 |
| Q9SJA1 | Ubiquitin carboxyl-terminal hydrolase 19 OS=Arabidopsis thaliana OX=3702 GN=UBP19 PE=2 SV=2 | 0 | |
| TrEMBL | A0A803LXU6 | Ubiquitin carboxyl-terminal hydrolase 18-like OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology