halophFGD

Basic Information

Locus ID: Ah031652

Species & Taxonomic ID: Atriplex hortensis & 34272

Genome Assembly: Atriplex hortensis v2.0

Description: Ribonuclease H protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
Scaffold_1311_HRSCAF_2062	313283	337120	+	Ah031652

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
8.82	176,845.95 Da	42.18	77.31	-0.55

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF14111	Domain of unknown function (DUF4283)	1192	1335	3.7E-32	IPR025558
Pfam	PF14111	Domain of unknown function (DUF4283)	312	394	2.5E-9	IPR025558
Pfam	PF14111	Domain of unknown function (DUF4283)	510	597	1.9E-21	IPR025558
Pfam	PF14392	Zinc knuckle	613	645	0.44	IPR025836
Pfam	PF14392	Zinc knuckle	1352	1383	0.47	IPR025836
Pfam	PF14111	Domain of unknown function (DUF4283)	890	935	8.8E-8	IPR025558
Pfam	PF14392	Zinc knuckle	952	983	2.7	IPR025836
Pfam	PF14392	Zinc knuckle	1527	1551	0.14	IPR025836
SMART	SM00343	c2hcfinal6	1536	1552	32.0	IPR001878
SMART	SM00343	c2hcfinal6	1369	1385	1.4	IPR001878
SMART	SM00343	c2hcfinal6	631	647	3.1	IPR001878
SMART	SM00343	c2hcfinal6	969	985	0.68	IPR001878
MobiDBLite	mobidb-lite	consensus disorder prediction	736	757	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1562	1577	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	42	60	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	21	41	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1554	1577	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	493	513	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1	60	-	-
Coils	Coil	Coil	491	511	-	-
Coils	Coil	Coil	13	41	-	-
Coils	Coil	Coil	246	266	-	-

Gene Ontology

Molecular Function:

GO:0003676 (nucleic acid binding) GO:0008270 (zinc ion binding)

Best hit

Source	Best Hit ID	Description	E-value
RefSeq	XP_048496435.1	uncharacterized protein LOC125495687 [Beta vulgaris subsp. vulgaris]	0
TrEMBL	A0A1U7WWN9	uncharacterized protein LOC104230577 OS=Nicotiana sylvestris OX=4096 GN=LOC104230577 PE=4 SV=1	0

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	1	jg16862
Aizoaceae	Mesembryanthemum crystallinum	11	gene_11460, gene_19884, gene_20133, gene_20829, gene_25490 ... gene_25525, gene_25572, gene_8803, gene_9475, gene_9585, gene_9759
Amaranthaceae	Atriplex hortensis	132	Ah000002, Ah000003, Ah001269, Ah001270, Ah001275, Ah001745 ... Ah001992, Ah002152, Ah002220, Ah002303, Ah002311, Ah002685, Ah003005, Ah003237, Ah004823, Ah004826, Ah004827, Ah004828, Ah004833, Ah005722, Ah005796, Ah007152, Ah007248, Ah007264, Ah007291, Ah007704, Ah007869, Ah009199, Ah009200, Ah011311, Ah011778, Ah012024, Ah012190, Ah012351, Ah012774, Ah012807, Ah012931, Ah014126, Ah014128, Ah014129, Ah015871, Ah015903, Ah015904, Ah015970, Ah016119, Ah016132, Ah016163, Ah016167, Ah016318, Ah016456, Ah016878, Ah016970, Ah017180, Ah018136, Ah018137, Ah018139, Ah019297, Ah019554, Ah020499, Ah020514, Ah020828, Ah021218, Ah021477, Ah021762, Ah021851, Ah022559, Ah022560, Ah022561, Ah024541, Ah024857, Ah025018, Ah025114, Ah025263, Ah025283, Ah025575, Ah027690, Ah027696, Ah029484, Ah030153, Ah030735, Ah030739, Ah031500, Ah031624, Ah031625, Ah031626, Ah031627, Ah031628, Ah031630, Ah031632, Ah031633, Ah031640, Ah031641, Ah031643, Ah031644, Ah031645, Ah031646, Ah031649, Ah031650, Ah031651, Ah031652, Ah031654, Ah031655, Ah031656, Ah031657, Ah031659, Ah032317, Ah032476, Ah032477, Ah033237, Ah033430, Ah033744, Ah033817, Ah033824, Ah034262, Ah035649, Ah036526, Ah036692, Ah037023, Ah037169, Ah037238, Ah037307, Ah037745, Ah037773, Ah038328, Ah038658, Ah038664, Ah038706, Ah038897, Ah038898, Ah039232, Ah039314, Ah039354
Amaranthaceae	Beta vulgaris	4	BVRB_5g109190, BVRB_6g144270, BVRB_7g162240, BVRB_8g189880
Amaranthaceae	Salicornia bigelovii	68	Sbi_jg10376, Sbi_jg15645, Sbi_jg15998, Sbi_jg15999 ... Sbi_jg16051, Sbi_jg16052, Sbi_jg16148, Sbi_jg16565, Sbi_jg18191, Sbi_jg195, Sbi_jg2472, Sbi_jg25324, Sbi_jg2556, Sbi_jg25560, Sbi_jg2561, Sbi_jg25965, Sbi_jg26167, Sbi_jg27601, Sbi_jg27747, Sbi_jg28287, Sbi_jg30628, Sbi_jg31398, Sbi_jg31574, Sbi_jg33083, Sbi_jg36534, Sbi_jg36731, Sbi_jg36795, Sbi_jg37104, Sbi_jg37749, Sbi_jg37892, Sbi_jg38901, Sbi_jg39349, Sbi_jg40919, Sbi_jg40958, Sbi_jg41137, Sbi_jg41562, Sbi_jg41769, Sbi_jg41771, Sbi_jg41809, Sbi_jg42158, Sbi_jg42851, Sbi_jg43959, Sbi_jg44517, Sbi_jg47392, Sbi_jg48919, Sbi_jg49425, Sbi_jg51203, Sbi_jg51278, Sbi_jg51748, Sbi_jg51801, Sbi_jg52701, Sbi_jg54000, Sbi_jg54252, Sbi_jg5504, Sbi_jg57426, Sbi_jg57644, Sbi_jg59847, Sbi_jg59941, Sbi_jg60464, Sbi_jg60474, Sbi_jg61134, Sbi_jg62877, Sbi_jg63408, Sbi_jg6834, Sbi_jg7037, Sbi_jg730, Sbi_jg889, Sbi_jg9380
Amaranthaceae	Salicornia europaea	37	Seu_jg10561, Seu_jg10564, Seu_jg10598, Seu_jg10842 ... Seu_jg10986, Seu_jg13392, Seu_jg13399, Seu_jg1381, Seu_jg14975, Seu_jg15718, Seu_jg1577, Seu_jg1604, Seu_jg17216, Seu_jg21992, Seu_jg22112, Seu_jg22113, Seu_jg22900, Seu_jg23993, Seu_jg24480, Seu_jg24504, Seu_jg24669, Seu_jg25002, Seu_jg26451, Seu_jg26452, Seu_jg28001, Seu_jg28007, Seu_jg3490, Seu_jg3828, Seu_jg3868, Seu_jg3950, Seu_jg3983, Seu_jg4587, Seu_jg638, Seu_jg7174, Seu_jg7177, Seu_jg7334, Seu_jg8025
Amaranthaceae	Suaeda aralocaspica	86	GOSA_00001719, GOSA_00001817, GOSA_00002768, GOSA_00003791 ... GOSA_00007980, GOSA_00009617, GOSA_00009618, GOSA_00010475, GOSA_00010536, GOSA_00011991, GOSA_00012397, GOSA_00012434, GOSA_00012455, GOSA_00012456, GOSA_00013210, GOSA_00013657, GOSA_00013719, GOSA_00013874, GOSA_00014024, GOSA_00014296, GOSA_00014302, GOSA_00014503, GOSA_00014552, GOSA_00015057, GOSA_00015059, GOSA_00015269, GOSA_00015273, GOSA_00015690, GOSA_00015790, GOSA_00016062, GOSA_00016131, GOSA_00016201, GOSA_00016616, GOSA_00016638, GOSA_00016693, GOSA_00016770, GOSA_00016771, GOSA_00017425, GOSA_00017428, GOSA_00017739, GOSA_00017771, GOSA_00018704, GOSA_00019340, GOSA_00019679, GOSA_00019813, GOSA_00020913, GOSA_00020932, GOSA_00020934, GOSA_00021141, GOSA_00021806, GOSA_00021919, GOSA_00022359, GOSA_00022551, GOSA_00022552, GOSA_00022947, GOSA_00023527, GOSA_00023659, GOSA_00023710, GOSA_00024467, GOSA_00025219, GOSA_00025243, GOSA_00025351, GOSA_00025753, GOSA_00025773, GOSA_00026031, GOSA_00026036, GOSA_00026184, GOSA_00026400, GOSA_00026423, GOSA_00026476, GOSA_00027448, GOSA_00027634, GOSA_00027742, GOSA_00027770, GOSA_00028006, GOSA_00028050, GOSA_00028207, GOSA_00028338, GOSA_00028731, GOSA_00028954, GOSA_00028967, GOSA_00028999, GOSA_00029004, GOSA_00029102, GOSA_00029157, GOSA_00029532
Amaranthaceae	Suaeda glauca	69	Sgl00433, Sgl03709, Sgl04307, Sgl04310, Sgl04909, Sgl05485 ... Sgl08398, Sgl08816, Sgl09380, Sgl09384, Sgl09966, Sgl13770, Sgl13916, Sgl13936, Sgl14039, Sgl14067, Sgl14397, Sgl14929, Sgl18734, Sgl19198, Sgl19221, Sgl20052, Sgl20888, Sgl22336, Sgl26283, Sgl26761, Sgl31287, Sgl31292, Sgl31636, Sgl31688, Sgl36385, Sgl36946, Sgl36992, Sgl36994, Sgl38623, Sgl42708, Sgl43010, Sgl43170, Sgl43486, Sgl44768, Sgl44780, Sgl45532, Sgl47444, Sgl47740, Sgl47833, Sgl47982, Sgl47985, Sgl48291, Sgl49527, Sgl49537, Sgl49742, Sgl50307, Sgl53203, Sgl53379, Sgl58467, Sgl58644, Sgl64273, Sgl64766, Sgl64776, Sgl65077, Sgl65562, Sgl69234, Sgl69499, Sgl74396, Sgl78942, Sgl79016, Sgl79391, Sgl79516, Sgl81858
Amaranthaceae	Chenopodium quinoa	9	CQ.Regalona.r1.1AG0019320, CQ.Regalona.r1.1BG0007970 ... CQ.Regalona.r1.1BG0022280, CQ.Regalona.r1.2AG0010470, CQ.Regalona.r1.3AG0016300, CQ.Regalona.r1.3BG0009890, CQ.Regalona.r1.4AG0016170, CQ.Regalona.r1.8BG0014530, CQ.Regalona.r1.9AG0006980
Anacardiaceae	Pistacia vera	2	pistato.v30080690, pistato.v30168020
Apiaceae	Apium graveolens	1	Ag7G01837
Arecaceae	Cocos nucifera	1	COCNU_06G002910
Arecaceae	Phoenix dactylifera	12	gene-LOC103697350, gene-LOC103699210, gene-LOC103701669 ... gene-LOC108511900, gene-LOC120104226, gene-LOC120104860, gene-LOC120105420, gene-LOC120108429, gene-LOC120108712, gene-LOC120110622, gene-LOC120111416, gene-LOC120112511
Asteraceae	Flaveria trinervia	29	Ftri11G19931, Ftri12G05665, Ftri14G08850, Ftri14G08889 ... Ftri16G05481, Ftri17G05160, Ftri17G19117, Ftri18G23100, Ftri18G29950, Ftri18G30424, Ftri1G02558, Ftri2G03096, Ftri3G03972, Ftri4G10374, Ftri4G22344, Ftri5G15836, Ftri6G15581, Ftri8G19030, Ftri8G21703, Ftri9G24154, FtriNA00092, FtriNA00847, FtriNA05138, FtriNA10377, FtriNA11534, FtriNA22047, FtriNA26242, FtriNA26351, FtriNA31790
Brassicaceae	Eutrema salsugineum	11	Thhalv10000459m.g.v1.0, Thhalv10000538m.g.v1.0 ... Thhalv10002285m.g.v1.0, Thhalv10003309m.g.v1.0, Thhalv10015367m.g.v1.0, Thhalv10015497m.g.v1.0, Thhalv10015566m.g.v1.0, Thhalv10017665m.g.v1.0, Thhalv10022289m.g.v1.0, Thhalv10024027m.g.v1.0, Thhalv10029226m.g.v1.0
Brassicaceae	Brassica nigra	13	BniB01g036660.2N, BniB02g007180.2N, BniB02g011620.2N ... BniB04g037530.2N, BniB04g054850.2N, BniB05g040970.2N, BniB06g027900.2N, BniB06g036310.2N, BniB06g040220.2N, BniB08g030300.2N, BniB08g048980.2N, BniB08g051080.2N, BniB08g052430.2N
Cymodoceaceae	Cymodocea nodosa	1	gene.Cymno16g02510
Hydrocharitaceae	Thalassia testudinum	52	gene.Thate01g00780, gene.Thate01g01260, gene.Thate01g06740 ... gene.Thate01g12900, gene.Thate01g13060, gene.Thate01g13520, gene.Thate01g16640, gene.Thate01g20880, gene.Thate01g31060, gene.Thate01g32020, gene.Thate01g33810, gene.Thate02g06660, gene.Thate02g15600, gene.Thate02g15620, gene.Thate02g16920, gene.Thate02g22440, gene.Thate02g24850, gene.Thate02g24860, gene.Thate03g06150, gene.Thate03g09200, gene.Thate03g14080, gene.Thate03g14780, gene.Thate03g16290, gene.Thate04g16410, gene.Thate04g20620, gene.Thate04g21970, gene.Thate04g22550, gene.Thate04g23190, gene.Thate05g00340, gene.Thate05g09490, gene.Thate05g11650, gene.Thate05g11790, gene.Thate05g17650, gene.Thate05g25340, gene.Thate06g05870, gene.Thate06g10600, gene.Thate06g16300, gene.Thate06g17910, gene.Thate06g24890, gene.Thate07g02840, gene.Thate07g17460, gene.Thate08g03050, gene.Thate08g05780, gene.Thate08g06410, gene.Thate08g07800, gene.Thate08g08310, gene.Thate08g10630, gene.Thate08g19980, gene.Thate09g04570, gene.Thate09g06030, gene.Thate09g12710, gene.Thate09g20930
Malvaceae	Hibiscus hamabo Siebold & Zucc.	8	nbisL1-mrna-12292, nbisL1-mrna-1699, nbisL1-mrna-3858 ... nbisL1-mrna-453, nbisL1-mrna-7270, nbisL1-mrna-7386, nbisL1-mrna-7532, nbisL1-mrna-8611
Plantaginaceae	Plantago ovata	38	Pov_00001397, Pov_00004564, Pov_00005421, Pov_00005732 ... Pov_00009839, Pov_00010473, Pov_00011563, Pov_00012049, Pov_00012342, Pov_00012598, Pov_00017687, Pov_00017725, Pov_00017755, Pov_00018067, Pov_00018490, Pov_00019119, Pov_00019192, Pov_00019240, Pov_00020738, Pov_00030569, Pov_00030659, Pov_00030800, Pov_00030833, Pov_00031160, Pov_00031867, Pov_00032892, Pov_00033896, Pov_00034073, Pov_00034081, Pov_00034133, Pov_00034628, Pov_00034656, Pov_00034793, Pov_00034930, Pov_00035316, Pov_00035488, Pov_00035557, Pov_00041556
Plumbaginaceae	Limonium bicolor	120	Lb0G36745, Lb0G37284, Lb0G37515, Lb0G37958, Lb0G38157 ... Lb0G38430, Lb1G00064, Lb1G00119, Lb1G00167, Lb1G00294, Lb1G00296, Lb1G00410, Lb1G00411, Lb1G00636, Lb1G00763, Lb1G00844, Lb1G01437, Lb1G01453, Lb1G01472, Lb1G01475, Lb1G01730, Lb1G01962, Lb1G01975, Lb1G01988, Lb1G02900, Lb1G03057, Lb1G03199, Lb1G05172, Lb1G05988, Lb1G07296, Lb1G07603, Lb1G07689, Lb1G07697, Lb1G07816, Lb1G07863, Lb2G08297, Lb2G08739, Lb2G09834, Lb2G11230, Lb2G11309, Lb2G11489, Lb2G11772, Lb2G13199, Lb2G14059, Lb2G14331, Lb2G14754, Lb2G14950, Lb2G14992, Lb2G15132, Lb2G15409, Lb3G15703, Lb3G16011, Lb3G16091, Lb3G16207, Lb3G16221, Lb3G16392, Lb3G16716, Lb3G17202, Lb3G17290, Lb3G18084, Lb3G18623, Lb3G19002, Lb3G19744, Lb3G20617, Lb3G20626, Lb3G20656, Lb3G21216, Lb3G21217, Lb3G21222, Lb3G21227, Lb3G21254, Lb4G22787, Lb4G23606, Lb4G24492, Lb4G24624, Lb4G24679, Lb4G24731, Lb4G25890, Lb4G26039, Lb4G26227, Lb4G26393, Lb4G26403, Lb5G26648, Lb5G27165, Lb5G27965, Lb5G27975, Lb5G28003, Lb5G28570, Lb5G28573, Lb5G28574, Lb5G28576, Lb5G28796, Lb5G29516, Lb6G29701, Lb6G30057, Lb6G30310, Lb6G30742, Lb6G31180, Lb6G32180, Lb6G32341, Lb7G32742, Lb7G32952, Lb7G33071, Lb7G33167, Lb7G33294, Lb7G33385, Lb7G33576, Lb7G33664, Lb7G34175, Lb7G34182, Lb7G34280, Lb7G34351, Lb7G34448, Lb7G34622, Lb7G34624, Lb7G34625, Lb7G34730, Lb8G35756, Lb8G35862, Lb8G36294
Poaceae	Puccinellia tenuiflora	1	Pt_Chr0401542
Portulacaceae	Portulaca oleracea	7	evm.TU.LG08.194, evm.TU.LG12.262, evm.TU.LG13.807 ... evm.TU.LG14.27, evm.TU.LG21.1209, evm.TU.LG24.103, evm.TU.LG24.649
Posidoniaceae	Posidonia oceanica	26	gene.Posoc01g10090, gene.Posoc01g13380, gene.Posoc01g13760 ... gene.Posoc01g17030, gene.Posoc01g18770, gene.Posoc01g22320, gene.Posoc01g24900, gene.Posoc01g31620, gene.Posoc02g03110, gene.Posoc02g07340, gene.Posoc02g13320, gene.Posoc02g14030, gene.Posoc02g14660, gene.Posoc03g19920, gene.Posoc03g23940, gene.Posoc04g14830, gene.Posoc05g09060, gene.Posoc05g10690, gene.Posoc06g20220, gene.Posoc06g20750, gene.Posoc06g21030, gene.Posoc06g21350, gene.Posoc06g21360, gene.Posoc06g21760, gene.Posoc07g09850, gene.Posoc10g08450
Salicaceae	Populus euphratica	14	populus_peu07915, populus_peu07952, populus_peu08068 ... populus_peu08338, populus_peu09142, populus_peu09348, populus_peu17907, populus_peu19238, populus_peu23840, populus_peu23843, populus_peu24057, populus_peu35326, populus_peu35340, populus_peu35347
Solanaceae	Lycium barbarum	64	gene-LOC132600313, gene-LOC132601199, gene-LOC132601250 ... gene-LOC132601402, gene-LOC132601689, gene-LOC132601755, gene-LOC132601964, gene-LOC132603526, gene-LOC132606571, gene-LOC132607872, gene-LOC132608098, gene-LOC132609567, gene-LOC132612097, gene-LOC132612099, gene-LOC132612157, gene-LOC132612418, gene-LOC132612810, gene-LOC132613254, gene-LOC132613295, gene-LOC132613322, gene-LOC132615219, gene-LOC132616012, gene-LOC132616398, gene-LOC132616806, gene-LOC132619624, gene-LOC132620214, gene-LOC132620253, gene-LOC132624075, gene-LOC132624291, gene-LOC132624308, gene-LOC132624535, gene-LOC132624755, gene-LOC132628318, gene-LOC132628322, gene-LOC132628505, gene-LOC132628564, gene-LOC132628891, gene-LOC132628988, gene-LOC132629783, gene-LOC132630314, gene-LOC132630340, gene-LOC132631110, gene-LOC132631441, gene-LOC132631446, gene-LOC132636745, gene-LOC132637115, gene-LOC132637331, gene-LOC132637341, gene-LOC132637367, gene-LOC132637984, gene-LOC132639151, gene-LOC132639162, gene-LOC132639194, gene-LOC132639275, gene-LOC132639317, gene-LOC132639853, gene-LOC132639857, gene-LOC132641897, gene-LOC132643842, gene-LOC132643924, gene-LOC132643943, gene-LOC132644453, gene-LOC132644485, gene-LOC132644699
Solanaceae	Solanum chilense	19	SOLCI000042200, SOLCI000462900, SOLCI001094800 ... SOLCI001202600, SOLCI001974400, SOLCI002225500, SOLCI002397900, SOLCI002688200, SOLCI002688300, SOLCI003312900, SOLCI004323000, SOLCI004827300, SOLCI005439900, SOLCI005767500, SOLCI005777500, SOLCI006341900, SOLCI006505700, SOLCI006723200, SOLCI006791500
Solanaceae	Solanum pennellii	12	gene-LOC107001219, gene-LOC107006173, gene-LOC107006214 ... gene-LOC107006364, gene-LOC107016517, gene-LOC107016532, gene-LOC107019624, gene-LOC107021228, gene-LOC107022274, gene-LOC107025065, gene-LOC107030038, gene-LOC107030130
Tamaricaceae	Reaumuria soongarica	22	MSTRG.1301_chr01_-, MSTRG.16734_chr09_+, MSTRG.18894_chr10_+ ... MSTRG.290_chr01_+, MSTRG.3990_chr02_+, STRG.20644_chr08_-, STRG.21624_chr08_+, STRG.30075_chr10_-, STRG.31019_chr11_-, STRG.3530_chr02_+, STRG.3637_chr02_-, STRG.3753_chr02_-, STRG.4181_chr03_+, STRG.5344_chr02_+, STRG.5636_chr03_+, STRG.5942_chr02_+, STRG.8092_chr05_+, STRG.8528_chr06_-, STRG.9012_chr03_+, STRG.9974_chr06_-, gene_17457, gene_9443
Tamaricaceae	Tamarix chinensis	49	TC01G0230, TC01G0739, TC01G0942, TC01G1551, TC01G2161 ... TC01G3725, TC02G0124, TC02G0128, TC02G2183, TC02G3351, TC02G3515, TC02G3614, TC02G3625, TC02G3776, TC03G0500, TC03G1183, TC03G1393, TC03G2523, TC04G0784, TC04G0940, TC04G1162, TC04G1214, TC04G1859, TC04G2843, TC04G2951, TC05G0680, TC05G0757, TC05G1720, TC05G1878, TC06G1274, TC06G1311, TC06G1348, TC07G0121, TC07G2081, TC08G0003, TC08G0574, TC08G2579, TC09G1244, TC09G1483, TC10G2104, TC11G1742, TC11G1747, TC11G2011, TC12G0071, TC12G0086, TC12G1125, TC12G1366, TC12G1381, TC12G2145
Zosteraceae	Zostera marina	3	Zosma04g09440.v3.1, Zosma04g11690.v3.1, Zosma25g00110.v3.1