Basic Information
Locus ID:
Ah031514
Species & Taxonomic ID:
Atriplex hortensis & 34272
Genome Assembly:
Atriplex hortensis v2.0
Description:
Reverse transcriptase (RNA-dependent DNA polymerase)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Scaffold_1313_HRSCAF_2064 | 96462979 | 96463674 | + | Ah031514 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.61 | 11,134.79 Da | 24.58 | 105.67 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00069 | Protein kinase domain | 22 | 95 | 4.8E-16 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 11 | 97 | 1.08E-24 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 1 | 97 | 2.7E-25 | - |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1 | 97 | 18.887983 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 53 | 65 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G23240.2 | - | 0 |
| RefSeq | XP_021723257.1 | putative receptor-like protein kinase At4g00960 [Chenopodium quinoa] | 0 |
| O65483 | Cysteine-rich receptor-like protein kinase 24 OS=Arabidopsis thaliana OX=3702 GN=CRK24 PE=3 SV=2 | 0 | |
| TrEMBL | A0A803MI02 | Protein kinase domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg2136 |
| Amaranthaceae | Atriplex hortensis | 4 | Ah003627, Ah017478, Ah017734, Ah031514 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00011440, GOSA_00012107 |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000033066 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30065570 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G1043300 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG082020, gene_TRIDC3BG079770 |
| Poaceae | Zoysia japonica | 4 | nbis-gene-11728, nbis-gene-20192, nbis-gene-22941 ... |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-26558, nbisL1-mrna-29828 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-12602, nbisL1-mrna-24800 |
| Salicaceae | Populus euphratica | 1 | populus_peu27963 |