Basic Information
Locus ID:
Ah031355
Species & Taxonomic ID:
Atriplex hortensis & 34272
Genome Assembly:
Atriplex hortensis v2.0
Description:
Zinc finger CCCH domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Scaffold_1313_HRSCAF_2064 | 93933058 | 93936589 | - | Ah031355 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.34 | 51,651.41 Da | 37.90 | 77.71 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 293 | 328 | 2.4E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 333 | 367 | 0.07 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 171 | 207 | 3.2E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 149 | 455 | 7.97E-46 | IPR036322 |
| Gene3D | G3DSA:3.30.1370.210 | - | 4 | 65 | 1.2E-5 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 292 | 467 | 1.8E-28 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 149 | 291 | 7.5E-20 | IPR015943 |
| SMART | SM00320 | WD40_4 | 247 | 284 | 14.0 | IPR001680 |
| SMART | SM00356 | c3hfinal6 | 137 | 163 | 0.0023 | IPR000571 |
| SMART | SM00356 | c3hfinal6 | 29 | 52 | 9.4E-4 | IPR000571 |
| SMART | SM00320 | WD40_4 | 168 | 207 | 3.5E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 331 | 368 | 0.0049 | IPR001680 |
| SMART | SM00320 | WD40_4 | 291 | 328 | 4.2E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 372 | 415 | 6.7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 418 | 455 | 10.0 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 298 | 337 | 14.284707 | IPR001680 |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 137 | 164 | 13.516174 | IPR000571 |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 27 | 53 | 13.112443 | IPR000571 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 175 | 216 | 13.048234 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 298 | 331 | 10.811958 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 175 | 207 | 10.23196 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 315 | 329 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 355 | 369 | 1.4E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 194 | 208 | 1.4E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 315 | 329 | 1.4E-6 | IPR020472 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G25440.1 | zinc finger WD40 repeat protein 1. | 0 |
| RefSeq | XP_021731198.1 | zinc finger CCCH domain-containing protein 48-like [Chenopodium quinoa] | 0 |
| Q0DYP5 | Zinc finger CCCH domain-containing protein 17 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0677700 PE=2 SV=2 | 0 | |
| TrEMBL | A0A803MB75 | Zinc finger CCCH domain-containing protein 48-like OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology