Basic Information
Locus ID:
Ah030358
Species & Taxonomic ID:
Atriplex hortensis & 34272
Genome Assembly:
Atriplex hortensis v2.0
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Scaffold_1313_HRSCAF_2064 | 62824083 | 62831002 | - | Ah030358 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.32 | 41,405.54 Da | 57.19 | 65.23 | -0.57 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16789 | mRING-HC-C3HC5_MGRN1_like---blasttree | 314 | 354 | 1.54778E-28 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 313 | 359 | 7.7E-16 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 314 | 360 | 1.65E-12 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 299 | 364 | 5.0E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 315 | 353 | 2.6E-4 | IPR001841 |
| PIRSF | PIRSF036836 | SBP1_RNase_bind | 5 | 55 | 2100.0 | IPR017066 |
| PIRSF | PIRSF036836 | SBP1_RNase_bind | 286 | 365 | 1.6E-8 | IPR017066 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 315 | 354 | 11.161508 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 22 | 39 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 45 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 15 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G09770.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_021770600.1 | probable E3 ubiquitin-protein ligase LOG2 [Chenopodium quinoa] | 0 |
| Q9S752 | Probable E3 ubiquitin-protein ligase LOG2 OS=Arabidopsis thaliana OX=3702 GN=LOG2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9S0M0 | RING-type E3 ubiquitin transferase OS=Spinacia oleracea OX=3562 GN=SOVF_007980 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology