Basic Information
Locus ID:
Ah030231
Species & Taxonomic ID:
Atriplex hortensis & 34272
Genome Assembly:
Atriplex hortensis v2.0
Short Name:
UPL4
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Scaffold_1313_HRSCAF_2064 | 56089415 | 56091813 | + | Ah030231 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.60 | 30,067.01 Da | 57.35 | 91.24 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00632 | HECT-domain (ubiquitin-transferase) | 228 | 266 | 1.1E-9 | IPR000569 |
| Pfam | PF00632 | HECT-domain (ubiquitin-transferase) | 65 | 207 | 1.9E-19 | IPR000569 |
| SUPERFAMILY | SSF56204 | Hect, E3 ligase catalytic domain | 66 | 265 | 6.02E-41 | IPR035983 |
| Gene3D | G3DSA:3.30.2410.10 | Hect, E3 ligase catalytic domain | 196 | 266 | 2.6E-10 | - |
| Gene3D | G3DSA:3.90.1750.10 | Hect, E3 ligase catalytic domains | 7 | 143 | 3.2E-16 | - |
| SMART | SM00119 | hect_3 | 6 | 267 | 1.8E-7 | IPR000569 |
| ProSiteProfiles | PS50237 | HECT domain profile. | 30 | 267 | 17.258009 | IPR000569 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G02880.1 | ubiquitin-protein ligase 4. encodes a ubiquitin-protein ligase containing a HECT domain. There are six other HECT-domain UPLs in Arabidopsis. | 0 |
| RefSeq | XP_021765852.1 | E3 ubiquitin-protein ligase UPL4-like [Chenopodium quinoa] | 0 |
| Q9LYZ7 | E3 ubiquitin-protein ligase UPL4 OS=Arabidopsis thaliana OX=3702 GN=UPL4 PE=3 SV=1 | 0 | |
| TrEMBL | A0A803N3D8 | HECT-type E3 ubiquitin transferase OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology