Basic Information
Locus ID:
Ah030230
Species & Taxonomic ID:
Atriplex hortensis & 34272
Genome Assembly:
Atriplex hortensis v2.0
Short Name:
UPL4
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Scaffold_1313_HRSCAF_2064 | 56024432 | 56038316 | + | Ah030230 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.32 | 174,610.63 Da | 50.69 | 92.98 | -0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00078 | HECTc | 1185 | 1579 | 1.20534E-111 | IPR000569 |
| Pfam | PF00632 | HECT-domain (ubiquitin-transferase) | 1232 | 1581 | 1.1E-76 | IPR000569 |
| SUPERFAMILY | SSF56204 | Hect, E3 ligase catalytic domain | 1180 | 1574 | 4.84E-90 | IPR035983 |
| SUPERFAMILY | SSF48371 | ARM repeat | 93 | 545 | 7.4E-38 | IPR016024 |
| Gene3D | G3DSA:3.90.1750.10 | Hect, E3 ligase catalytic domains | 1130 | 1361 | 1.7E-37 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 100 | 550 | 3.8E-50 | IPR011989 |
| Gene3D | G3DSA:3.30.2410.10 | Hect, E3 ligase catalytic domain | 1467 | 1579 | 1.6E-33 | - |
| SMART | SM00119 | hect_3 | 1194 | 1581 | 8.5E-87 | IPR000569 |
| ProSiteProfiles | PS50237 | HECT domain profile. | 1201 | 1581 | 59.233986 | IPR000569 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 110 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1162 | 1176 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 30 | 71 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1162 | 1183 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G02880.1 | ubiquitin-protein ligase 4. encodes a ubiquitin-protein ligase containing a HECT domain. There are six other HECT-domain UPLs in Arabidopsis. | 0 |
| RefSeq | XP_021751622.1 | E3 ubiquitin-protein ligase UPL4-like isoform X2 [Chenopodium quinoa] | 0 |
| Q9LYZ7 | E3 ubiquitin-protein ligase UPL4 OS=Arabidopsis thaliana OX=3702 GN=UPL4 PE=3 SV=1 | 0 | |
| TrEMBL | A0A803N3U7 | HECT-type E3 ubiquitin transferase OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology