Basic Information
Locus ID:
Ah030112
Species & Taxonomic ID:
Atriplex hortensis & 34272
Genome Assembly:
Atriplex hortensis v2.0
Description:
TPL-binding domain in jasmonate signalling
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Scaffold_1313_HRSCAF_2064 | 49519288 | 49538226 | - | Ah030112 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.38 | 93,592.47 Da | 34.12 | 82.60 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF16135 | Tify domain binding domain | 258 | 313 | 1.1E-12 | IPR032308 |
| Pfam | PF00628 | PHD-finger | 496 | 538 | 4.5E-7 | IPR019787 |
| Pfam | PF16135 | Tify domain binding domain | 430 | 480 | 1.2E-13 | IPR032308 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 491 | 540 | 4.53E-13 | IPR011011 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 570 | 623 | 4.53E-6 | IPR011011 |
| SUPERFAMILY | SSF55729 | Acyl-CoA N-acyltransferases (Nat) | 722 | 818 | 3.09E-8 | IPR016181 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 484 | 554 | 1.3E-15 | IPR013083 |
| Gene3D | G3DSA:3.40.630.30 | - | 716 | 818 | 1.7E-5 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 567 | 628 | 1.9E-9 | IPR013083 |
| SMART | SM00249 | PHD_3 | 569 | 626 | 0.022 | IPR001965 |
| SMART | SM00249 | PHD_3 | 496 | 537 | 2.1E-9 | IPR001965 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 567 | 628 | 8.5466 | IPR019787 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 494 | 539 | 9.9706 | IPR019787 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 497 | 536 | - | IPR019786 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G37520.1 | Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain. | 0 |
| RefSeq | XP_021745532.1 | uncharacterized protein LOC110711460 isoform X2 [Chenopodium quinoa] | 0 |
| TrEMBL | A0A803N5V8 | PHD-type domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology