Basic Information
Locus ID:
Ah029922
Species & Taxonomic ID:
Atriplex hortensis & 34272
Genome Assembly:
Atriplex hortensis v2.0
Description:
lysM domain receptor-like kinase 4
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Scaffold_1313_HRSCAF_2064 | 39964409 | 39966466 | - | Ah029922 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.12 | 74,248.26 Da | 39.18 | 87.34 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00118 | LysM | 197 | 234 | 3.56928E-5 | IPR018392 |
| Pfam | PF00069 | Protein kinase domain | 410 | 644 | 5.6E-42 | IPR000719 |
| Pfam | PF01476 | LysM domain | 198 | 241 | 2.6E-5 | IPR018392 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 349 | 644 | 1.64E-64 | IPR011009 |
| Gene3D | G3DSA:3.10.350.10 | LysM domain | 196 | 250 | 5.2E-7 | IPR036779 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 351 | 443 | 7.5E-14 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 445 | 662 | 3.5E-55 | - |
| SMART | SM00257 | LysM_2 | 197 | 241 | 0.0027 | IPR018392 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 370 | 648 | 33.318798 | IPR000719 |
| ProSiteProfiles | PS51782 | LysM domain profile. | 196 | 240 | 10.736978 | IPR018392 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G33580.1 | Protein kinase superfamily protein. | 0 |
| RefSeq | XP_021746439.1 | protein LYK5-like [Chenopodium quinoa] | 0 |
| O22808 | Protein LYK5 OS=Arabidopsis thaliana OX=3702 GN=LYK5 PE=2 SV=1 | 0 | |
| TrEMBL | A0A803NB60 | Protein LYK5-like OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology