Basic Information
Locus ID:
Ah029859
Species & Taxonomic ID:
Atriplex hortensis & 34272
Genome Assembly:
Atriplex hortensis v2.0
Description:
isoform X1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Scaffold_1313_HRSCAF_2064 | 38570360 | 38576663 | - | Ah029859 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.55 | 62,503.45 Da | 39.81 | 85.65 | -0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01535 | PPR repeat | 171 | 200 | 2.9E-5 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 135 | 165 | 0.0018 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 49 | 71 | 0.056 | IPR002885 |
| Pfam | PF07039 | SGF29 tudor-like domain | 416 | 523 | 9.4E-18 | IPR010750 |
| Pfam | PF07039 | SGF29 tudor-like domain | 365 | 414 | 5.6E-9 | IPR010750 |
| Pfam | PF13041 | PPR repeat family | 202 | 251 | 6.9E-15 | IPR002885 |
| Gene3D | G3DSA:2.30.30.140 | - | 434 | 527 | 2.0E-17 | - |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 112 | 225 | 6.2E-31 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 226 | 374 | 8.2E-15 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 2 | 111 | 9.3E-13 | IPR011990 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 135 | 168 | 5.0E-6 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 170 | 204 | 1.6E-7 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 240 | 273 | 3.2E-6 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 205 | 238 | 5.0E-8 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 133 | 167 | 9.766576 | IPR002885 |
| ProSiteProfiles | PS51518 | SGF29 C-terminal domain profile. | 353 | 528 | 19.746483 | IPR010750 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 203 | 237 | 12.978237 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 238 | 272 | 10.117337 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 168 | 202 | 12.013642 | IPR002885 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G20090.1 | Pentatricopeptide repeat (PPR) superfamily protein. | 0 |
| RefSeq | XP_021744965.1 | uncharacterized protein LOC110710937 [Chenopodium quinoa] | 0 |
| O49436 | Pentatricopeptide repeat-containing protein At4g20090 OS=Arabidopsis thaliana OX=3702 GN=EMB1025 PE=3 SV=1 | 0 | |
| TrEMBL | A0A4U5NLW4 | Pentatricopeptide repeat-containing protein OS=Populus alba OX=43335 GN=D5086_0000256850 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg17755, jg19867, jg40405 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_17482 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah029859, Ah029863 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg35928, Sbi_jg647 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg3998 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00010482 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl64211, Sgl64217, Sgl68662, Sgl68665 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000001975, gene:ENSEOMG00000007335 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.7AG0013990 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30023280 |
| Apiaceae | Apium graveolens | 2 | Ag11G03656, Ag3G00879 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103717559 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.1918.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri18G04944, Ftri1G29314 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT3G27460.1, AT5G40550.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10004728m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp2g16670.v2.2 |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G1906 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G1983 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno07g09890, gene.Cymno08g03530 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate09g00490 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-6859, nbisL1-mrna-6863 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG05.259, evm.TU.LG05.265 |
| Plantaginaceae | Plantago ovata | 3 | Pov_00008520, Pov_00024193, Pov_00027826 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb3G20776, Lb6G30750, Lb7G33298 |
| Poaceae | Echinochloa crus-galli | 3 | AH05.3267, BH05.3301, CH05.3404 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_5AG0387830 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0450920.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_031755 |
| Poaceae | Oryza coarctata | 2 | Oco23G005150, Oco24G004740 |
| Poaceae | Oryza sativa | 1 | LOC_Os12g19350.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_08G067800 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0403163 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr06G022260, Chr19G014460, Chr27G001140 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G206200 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG019990, gene_TRIDC5BG020050 |
| Poaceae | Triticum aestivum | 4 | TraesCS5A02G119000.1, TraesCS5A02G119200.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb409000_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-12447 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g25727 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG06.954, evm.TU.LG11.303 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc05g16290, gene.Posoc10g11190 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_6_RagTag.107 |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-14928, nbisL1-mrna-2425, nbisL1-mrna-2550 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-615 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-97 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000011l.77 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00007228 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-11898 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-17484 |
| Salicaceae | Populus euphratica | 1 | populus_peu01121 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132625188 |
| Solanaceae | Solanum chilense | 1 | SOLCI003283500 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107011514 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.25723_chr11_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC03G1315 |
| Zosteraceae | Zostera marina | 1 | Zosma04g00960.v3.1 |