Basic Information
Locus ID:
Ah029823
Species & Taxonomic ID:
Atriplex hortensis & 34272
Genome Assembly:
Atriplex hortensis v2.0
Description:
RING finger and CHY zinc finger domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Scaffold_1313_HRSCAF_2064 | 37605518 | 37623289 | + | Ah029823 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.83 | 32,731.83 Da | 50.41 | 56.89 | -0.56 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 165 | 207 | 9.6E-9 | IPR001841 |
| Pfam | PF05495 | CHY zinc finger | 30 | 110 | 1.0E-18 | IPR008913 |
| Pfam | PF14599 | Zinc-ribbon | 212 | 269 | 4.0E-23 | IPR039512 |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 101 | 158 | 1.7E-19 | IPR037275 |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 28 | 99 | 6.41E-17 | IPR037274 |
| SUPERFAMILY | SSF57850 | RING/U-box | 164 | 212 | 2.94E-12 | - |
| Gene3D | G3DSA:2.20.28.10 | - | 235 | 277 | 4.6E-16 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 158 | 210 | 2.7E-12 | IPR013083 |
| SMART | SM00184 | ring_2 | 165 | 207 | 1.6E-6 | IPR001841 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 23 | 98 | 24.718321 | IPR008913 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 100 | 164 | 30.547291 | IPR017921 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 165 | 208 | 11.81064 | IPR001841 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G18650.1 | CHY-type/CTCHY-type/RING-type Zinc finger protein. | 0 |
| RefSeq | XP_021730929.1 | E3 ubiquitin-protein ligase MIEL1-like isoform X1 [Chenopodium quinoa] | 0 |
| Q8VZK0 | E3 ubiquitin-protein ligase MIEL1 OS=Arabidopsis thaliana OX=3702 GN=MIEL1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9RX36 | RING finger and CHY zinc finger domain-containing protein 1 OS=Spinacia oleracea OX=3562 GN=SOVF_019950 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology