Basic Information
Locus ID:
Ah029568
Species & Taxonomic ID:
Atriplex hortensis & 34272
Genome Assembly:
Atriplex hortensis v2.0
Description:
Pseudouridine synthase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Scaffold_1313_HRSCAF_2064 | 26199649 | 26206899 | - | Ah029568 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.86 | 16,265.66 Da | 33.98 | 92.88 | 0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00069 | Protein kinase domain | 39 | 87 | 1.4E-9 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 40 | 87 | 7.72E-16 | IPR011009 |
| SUPERFAMILY | SSF55120 | Pseudouridine synthase | 87 | 144 | 1.27E-9 | IPR020103 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 43 | 87 | 2.0E-8 | - |
| Gene3D | G3DSA:3.30.2350.10 | Pseudouridine synthase | 89 | 145 | 2.0E-9 | - |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1 | 142 | 9.389936 | IPR000719 |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G78910.2 | - | 0 |
| RefSeq | XP_021761953.1 | LOW QUALITY PROTEIN: RNA pseudouridine synthase 3, mitochondrial-like [Chenopodium quinoa] | 0 |
| Q60DG4 | Serine/threonine-protein kinase Nek4 OS=Oryza sativa subsp. japonica OX=39947 GN=NEK4 PE=2 SV=1 | 0 | |
| TrEMBL | A0A7C9AEM7 | PseudoU_synth_2 domain-containing protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Atriplex hortensis | 1 | Ah029568 |
| Amaranthaceae | Suaeda glauca | 1 | Sgl79019 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb2G11862, Lb4G23471 |
| Poaceae | Oryza sativa | 1 | LOC_Os09g32560.1 |