Basic Information
Locus ID:
Ah029290
Species & Taxonomic ID:
Atriplex hortensis & 34272
Genome Assembly:
Atriplex hortensis v2.0
Description:
Replication factor A
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Scaffold_1313_HRSCAF_2064 | 17773851 | 17777084 | - | Ah029290 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.46 | 41,401.32 Da | 46.15 | 81.38 | -0.64 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd04480 | RPA1_DBD_A_like | 2 | 58 | 2.13739E-12 | - |
| Pfam | PF02721 | Domain of unknown function DUF223 | 2 | 59 | 9.6E-6 | IPR003871 |
| Pfam | PF08646 | Replication factor-A C terminal domain | 223 | 329 | 6.2E-9 | IPR013955 |
| SUPERFAMILY | SSF50249 | Nucleic acid-binding proteins | 217 | 338 | 8.39E-16 | IPR012340 |
| SUPERFAMILY | SSF50249 | Nucleic acid-binding proteins | 73 | 162 | 2.23E-5 | IPR012340 |
| Gene3D | G3DSA:2.40.50.140 | - | 225 | 342 | 2.5E-8 | - |
| Gene3D | G3DSA:2.40.50.140 | - | 67 | 213 | 1.0E-12 | - |
| Gene3D | G3DSA:2.40.50.140 | - | 1 | 62 | 6.1E-7 | - |
KEGG Pathway
KO Term:
Pathway:
ko03030 (DNA replication)
map03030 (DNA replication)
ko03420 (Nucleotide excision repair)
map03420 (Nucleotide excision repair)
ko03430 (Mismatch repair)
map03430 (Mismatch repair)
ko03440 (Homologous recombination)
map03440 (Homologous recombination)
ko03460 (Fanconi anemia pathway)
map03460 (Fanconi anemia pathway)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_021859321.1 | replication protein A 70 kDa DNA-binding subunit B-like [Spinacia oleracea] | 0 |
| TrEMBL | A0A0K9QBQ8 | DUF223 domain-containing protein (Fragment) OS=Spinacia oleracea OX=3562 GN=SOVF_197310 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology