Basic Information
Locus ID:
Ah029154
Species & Taxonomic ID:
Atriplex hortensis & 34272
Genome Assembly:
Atriplex hortensis v2.0
Short Name:
ABCC5
Description:
ABC transporter C family member
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Scaffold_1313_HRSCAF_2064 | 15427869 | 15440463 | + | Ah029154 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.16 | 167,883.72 Da | 41.69 | 108.03 | 0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 954 | 1248 | 4.31167E-95 | IPR044726 |
| CDD | cd03250 | ABCC_MRP_domain1 | 630 | 829 | 8.45853E-102 | - |
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 317 | 604 | 2.1572E-105 | IPR044746 |
| CDD | cd03244 | ABCC_MRP_domain2 | 1271 | 1491 | 6.43635E-123 | - |
| Pfam | PF00005 | ABC transporter | 648 | 782 | 2.0E-18 | IPR003439 |
| Pfam | PF00005 | ABC transporter | 1290 | 1438 | 2.1E-29 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 956 | 1198 | 4.5E-29 | IPR011527 |
| Pfam | PF00664 | ABC transporter transmembrane region | 320 | 584 | 9.2E-30 | IPR011527 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 305 | 615 | 5.76E-38 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 626 | 851 | 2.81E-54 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 949 | 1256 | 1.44E-52 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1265 | 1501 | 2.33E-65 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 609 | 871 | 2.0E-73 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 304 | 608 | 7.2E-50 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 915 | 1254 | 6.6E-63 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 1257 | 1508 | 2.2E-80 | IPR027417 |
| SMART | SM00382 | AAA_5 | 657 | 838 | 9.3E-13 | IPR003593 |
| SMART | SM00382 | AAA_5 | 1299 | 1484 | 5.8E-15 | IPR003593 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 956 | 1226 | 36.539204 | IPR011527 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 319 | 596 | 37.309273 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1273 | 1507 | 17.793917 | IPR003439 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 630 | 853 | 22.442419 | IPR003439 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 755 | 769 | - | IPR017871 |
| Coils | Coil | Coil | 908 | 932 | - | - |
| Coils | Coil | Coil | 477 | 497 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G04120.1 | multidrug resistance-associated protein 5. encodes a high-affinity inositol hexakisphosphate transporter that plays a role in guard cell signaling and phytate storage. It is a member of MRP subfamily / ABC transporter subfamily C. | 0 |
| RefSeq | XP_021722170.1 | ABC transporter C family member 5-like [Chenopodium quinoa] | 0 |
| Q7GB25 | ABC transporter C family member 5 OS=Arabidopsis thaliana OX=3702 GN=ABCC5 PE=2 SV=2 | 0 | |
| TrEMBL | A0A803M957 | ABC-type xenobiotic transporter OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology