Basic Information
Locus ID:
Ah029123
Species & Taxonomic ID:
Atriplex hortensis & 34272
Genome Assembly:
Atriplex hortensis v2.0
Description:
WD repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Scaffold_1313_HRSCAF_2064 | 14995571 | 15022505 | + | Ah029123 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.27 | 61,727.16 Da | 47.42 | 92.40 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 238 | 532 | 2.4404E-53 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 495 | 532 | 3.7E-8 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 454 | 490 | 0.0017 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 237 | 273 | 3.7E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 324 | 362 | 0.21 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 232 | 532 | 3.48E-62 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 230 | 533 | 3.1E-65 | IPR015943 |
| SMART | SM00320 | WD40_4 | 448 | 490 | 0.32 | IPR001680 |
| SMART | SM00667 | Lish | 41 | 73 | 0.0082 | IPR006594 |
| SMART | SM00320 | WD40_4 | 234 | 273 | 4.1E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 493 | 533 | 1.5E-10 | IPR001680 |
| SMART | SM00320 | WD40_4 | 279 | 318 | 1.5E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 364 | 404 | 5.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 321 | 362 | 0.22 | IPR001680 |
| SMART | SM00320 | WD40_4 | 406 | 444 | 9.3 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 41 | 73 | 9.083396 | IPR006594 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 241 | 274 | 10.608706 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 286 | 327 | 13.382416 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 473 | 499 | 8.904377 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 500 | 532 | 11.998316 | - |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 74 | 131 | 8.627901 | IPR006595 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 500 | 532 | 14.518635 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 241 | 274 | 8.913786 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 286 | 322 | 10.574686 | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G43920.1 | transducin family protein / WD-40 repeat family protein. | 0 |
| RefSeq | XP_021763349.1 | WD repeat-containing protein 26-like [Chenopodium quinoa] | 0 |
| Q9FND4 | WD repeat-containing protein WDS homolog OS=Arabidopsis thaliana OX=3702 GN=WDS PE=1 SV=1 | 0 | |
| TrEMBL | A0A803LAD9 | WD repeat-containing protein 26 OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology