Basic Information
Locus ID:
Ah028748
Species & Taxonomic ID:
Atriplex hortensis & 34272
Genome Assembly:
Atriplex hortensis v2.0
Description:
Oligouridylate-binding protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Scaffold_1313_HRSCAF_2064 | 10476084 | 10484593 | - | Ah028748 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.61 | 51,171.17 Da | 44.68 | 67.88 | -0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12619 | RRM2_PUB1 | 142 | 260 | 3.1094E-43 | - |
| CDD | cd12354 | RRM3_TIA1_like | 306 | 381 | 1.48702E-32 | - |
| CDD | cd12352 | RRM1_TIA1_like | 55 | 125 | 6.60293E-36 | - |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 308 | 365 | 4.2E-11 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 143 | 206 | 3.1E-16 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 55 | 121 | 1.1E-11 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 298 | 387 | 2.44E-19 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 51 | 206 | 1.49E-40 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 139 | 270 | 3.6E-20 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 1 | 138 | 8.2E-23 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 283 | 386 | 5.9E-21 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 307 | 377 | 6.0E-15 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 54 | 123 | 3.6E-16 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 142 | 218 | 2.3E-16 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 306 | 381 | 14.368207 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 141 | 263 | 14.862814 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 53 | 127 | 14.760482 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 284 | 304 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G17370.1 | oligouridylate binding protein 1B. | 0 |
| RefSeq | XP_021720427.1 | oligouridylate-binding protein 1B-like isoform X1 [Chenopodium quinoa] | 0 |
| Q9LQI9 | Oligouridylate-binding protein 1B OS=Arabidopsis thaliana OX=3702 GN=UBP1B PE=1 SV=1 | 0 | |
| TrEMBL | A0A803KQY9 | Oligouridylate-binding protein 1-like OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology