Basic Information
Locus ID:
Ah028601
Species & Taxonomic ID:
Atriplex hortensis & 34272
Genome Assembly:
Atriplex hortensis v2.0
Description:
LRR-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Scaffold_1313_HRSCAF_2064 | 9236512 | 9239374 | + | Ah028601 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.60 | 59,792.97 Da | 54.03 | 100.63 | -0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 39 | 78 | 1.3E-10 | IPR001810 |
| SUPERFAMILY | SSF52058 | L domain-like | 167 | 447 | 9.01E-6 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 33 | 85 | 1.23E-12 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 27 | 85 | 1.7E-11 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 124 | 457 | 2.5E-6 | IPR032675 |
| SMART | SM00256 | fbox_2 | 43 | 83 | 1.1E-5 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 37 | 87 | 13.604101 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G13960.1 | F-box/RNI-like superfamily protein. | 0 |
| RefSeq | XP_021761777.1 | uncharacterized protein LOC110726612 [Chenopodium quinoa] | 0 |
| O23257 | Putative F-box/LRR-repeat protein At4g13960 OS=Arabidopsis thaliana OX=3702 GN=At4g13960 PE=4 SV=1 | 0 | |
| TrEMBL | A0A5B6YYA9 | F-box domain-containing protein OS=Davidia involucrata OX=16924 GN=Din_006288 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Atriplex hortensis | 7 | Ah023203, Ah023944, Ah028596, Ah028601, Ah028833, Ah035632 ... |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00019563 |
| Amaranthaceae | Chenopodium album | 8 | gene:ENSEOMG00000009927, gene:ENSEOMG00000016680 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.2AG0017870 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-18895 |
| Solanaceae | Lycium barbarum | 3 | gene-LOC132613385, gene-LOC132622071, gene-LOC132636488 |