Basic Information
Locus ID:
Ah028596
Species & Taxonomic ID:
Atriplex hortensis & 34272
Genome Assembly:
Atriplex hortensis v2.0
Description:
LRR-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Scaffold_1313_HRSCAF_2064 | 9166399 | 9176775 | + | Ah028596 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.10 | 39,960.41 Da | 54.02 | 100.58 | -0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 42 | 81 | 2.5E-12 | IPR001810 |
| SUPERFAMILY | SSF52047 | RNI-like | 77 | 295 | 3.53E-7 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 41 | 117 | 1.14E-13 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 33 | 85 | 6.9E-13 | - |
| SMART | SM00256 | fbox_2 | 46 | 86 | 5.2E-8 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 40 | 90 | 13.471629 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G13960.1 | F-box/RNI-like superfamily protein. | 0 |
| RefSeq | XP_021761777.1 | uncharacterized protein LOC110726612 [Chenopodium quinoa] | 0 |
| O23257 | Putative F-box/LRR-repeat protein At4g13960 OS=Arabidopsis thaliana OX=3702 GN=At4g13960 PE=4 SV=1 | 0 | |
| TrEMBL | A0A5B6YYA9 | F-box domain-containing protein OS=Davidia involucrata OX=16924 GN=Din_006288 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Atriplex hortensis | 7 | Ah023203, Ah023944, Ah028596, Ah028601, Ah028833, Ah035632 ... |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00019563 |
| Amaranthaceae | Chenopodium album | 8 | gene:ENSEOMG00000009927, gene:ENSEOMG00000016680 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.2AG0017870 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-18895 |
| Solanaceae | Lycium barbarum | 3 | gene-LOC132613385, gene-LOC132622071, gene-LOC132636488 |