Basic Information
Locus ID:
Ah028402
Species & Taxonomic ID:
Atriplex hortensis & 34272
Genome Assembly:
Atriplex hortensis v2.0
Description:
F-box kelch-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Scaffold_1313_HRSCAF_2064 | 6792590 | 6793900 | - | Ah028402 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.00 | 50,615.45 Da | 34.91 | 90.46 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07734 | F-box associated | 252 | 339 | 1.1E-7 | IPR006527 |
| Pfam | PF12937 | F-box-like | 8 | 48 | 3.3E-8 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 8 | 76 | 7.46E-9 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 5 | 49 | 1.8E-6 | - |
| SMART | SM00256 | fbox_2 | 9 | 49 | 2.2E-7 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 123 | 359 | 4.1E-13 | IPR017451 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 3 | 50 | 11.034144 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_021734161.1 | F-box/kelch-repeat protein At3g23880-like [Chenopodium quinoa] | 0 |
| TrEMBL | A0A6J1AWF3 | F-box protein CPR30-like OS=Herrania umbratica OX=108875 GN=LOC110421457 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 7 | gene_13562, gene_18928, gene_18929, gene_19416, gene_4730 ... |
| Amaranthaceae | Atriplex hortensis | 7 | Ah000401, Ah001137, Ah001139, Ah014368, Ah028400, Ah028402 ... |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg30749, Sbi_jg58515 |
| Amaranthaceae | Salicornia europaea | 5 | Seu_jg20870, Seu_jg28387, Seu_jg28388, Seu_jg28403 ... |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000010129 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.5BG0023560, CQ.Regalona.r1.8BG0020740 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG02.1040, evm.TU.LG09.933 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132644015 |