Basic Information
Locus ID:
Ah028376
Species & Taxonomic ID:
Atriplex hortensis & 34272
Genome Assembly:
Atriplex hortensis v2.0
Description:
neutrophil clearance
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Scaffold_1313_HRSCAF_2064 | 6495406 | 6498828 | - | Ah028376 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.99 | 100,885.25 Da | 39.26 | 90.69 | -0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 580 | 855 | 1.73099E-92 | - |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 329 | 367 | 7.7E-5 | IPR013210 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 578 | 850 | 1.2E-46 | IPR001245 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 42 | 69 | 1.4E-4 | IPR013210 |
| Pfam | PF00560 | Leucine Rich Repeat | 420 | 437 | 0.33 | IPR001611 |
| Pfam | PF12799 | Leucine Rich repeats (2 copies) | 96 | 135 | 6.4E-7 | IPR025875 |
| SUPERFAMILY | SSF52058 | L domain-like | 68 | 466 | 2.72E-49 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 562 | 861 | 2.0E-75 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 652 | 874 | 3.9E-57 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 36 | 326 | 1.2E-73 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 330 | 455 | 4.3E-30 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 536 | 651 | 4.6E-33 | - |
| SMART | SM00369 | LRR_typ_2 | 118 | 141 | 0.92 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 286 | 309 | 280.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 95 | 117 | 120.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 191 | 214 | 0.39 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 417 | 439 | 200.0 | IPR003591 |
| SMART | SM00220 | serkin_6 | 574 | 856 | 1.0E-42 | IPR000719 |
| SMART | SM00369 | LRR_typ_2 | 393 | 416 | 260.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 142 | 167 | 52.0 | IPR003591 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 574 | 856 | 40.230324 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 699 | 711 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 580 | 602 | - | IPR017441 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G23750.1 | Leucine-rich repeat protein kinase family protein. | 0 |
| RefSeq | XP_021749640.1 | receptor-like kinase TMK4 [Chenopodium quinoa] | 0 |
| Q9LK43 | Receptor-like kinase TMK4 OS=Arabidopsis thaliana OX=3702 GN=TMK4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9RIU5 | Protein kinase domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_061690 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology