Basic Information
Locus ID:
Ah028337
Species & Taxonomic ID:
Atriplex hortensis & 34272
Genome Assembly:
Atriplex hortensis v2.0
Description:
G3BP-like protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Scaffold_1313_HRSCAF_2064 | 6107363 | 6112110 | - | Ah028337 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.74 | 52,112.00 Da | 45.92 | 67.73 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00780 | NTF2 | 44 | 163 | 2.08372E-40 | IPR018222 |
| CDD | cd00590 | RRM_SF | 329 | 398 | 2.00955E-9 | - |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 329 | 385 | 2.9E-9 | IPR000504 |
| Pfam | PF02136 | Nuclear transport factor 2 (NTF2) domain | 48 | 162 | 9.2E-26 | IPR002075 |
| SUPERFAMILY | SSF54427 | NTF2-like | 45 | 163 | 9.25E-33 | IPR032710 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 314 | 434 | 1.76E-17 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 280 | 422 | 7.4E-13 | IPR012677 |
| Gene3D | G3DSA:3.10.450.50 | - | 37 | 167 | 1.3E-33 | - |
| SMART | SM00360 | rrm1_1 | 328 | 398 | 2.9E-9 | IPR000504 |
| ProSiteProfiles | PS50177 | Nuclear transport factor 2 domain profile. | 48 | 162 | 28.118109 | IPR018222 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 327 | 402 | 11.434679 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 451 | 497 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 14 | 31 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 275 | 310 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 31 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 399 | 429 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G25150.1 | Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain. | 0 |
| RefSeq | XP_021736940.1 | ras GTPase-activating protein-binding protein 1-like [Chenopodium quinoa] | 0 |
| Q9FME2 | Nuclear transport factor 2 OS=Arabidopsis thaliana OX=3702 GN=NTF2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803LNL2 | G3BP-like protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology