Basic Information
Locus ID:
Ah028284
Species & Taxonomic ID:
Atriplex hortensis & 34272
Genome Assembly:
Atriplex hortensis v2.0
Description:
LON peptidase N-terminal domain and RING finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Scaffold_1313_HRSCAF_2064 | 5718998 | 5720074 | + | Ah028284 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.99 | 39,616.40 Da | 57.95 | 71.84 | -0.70 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16449 | RING-HC | 310 | 347 | 5.42031E-10 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 309 | 351 | 3.7E-10 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 309 | 354 | 1.39E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 281 | 358 | 1.6E-12 | IPR013083 |
| SMART | SM00184 | ring_2 | 310 | 347 | 2.1E-4 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 310 | 348 | 10.984472 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 203 | 230 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 271 | 291 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 121 | 140 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 231 | 245 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 200 | 255 | - | - |
| Coils | Coil | Coil | 281 | 301 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G07120.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_021720045.1 | uncharacterized protein LOC110687733 [Chenopodium quinoa] | 0 |
| TrEMBL | A0A0K9R914 | RING-type domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_092810 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology