Basic Information
Locus ID:
Ah028264
Species & Taxonomic ID:
Atriplex hortensis & 34272
Genome Assembly:
Atriplex hortensis v2.0
Description:
WD repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Scaffold_1313_HRSCAF_2064 | 5525848 | 5530936 | - | Ah028264 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.55 | 119,982.75 Da | 44.81 | 63.12 | -0.77 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 799 | 823 | 0.012 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 590 | 626 | 1.4E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 474 | 505 | 7.4E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 632 | 671 | 0.0075 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 470 | 828 | 9.99E-52 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 457 | 849 | 5.4E-57 | IPR015943 |
| SMART | SM00320 | WD40_4 | 588 | 626 | 2.2E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 629 | 671 | 7.1E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 781 | 823 | 0.03 | IPR001680 |
| SMART | SM00320 | WD40_4 | 735 | 780 | 1.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 467 | 506 | 7.9E-8 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 474 | 508 | 11.286501 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 638 | 672 | 10.441614 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 638 | 672 | 8.781968 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 474 | 508 | 13.616343 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 595 | 628 | 11.049229 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 802 | 832 | 9.305395 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 595 | 635 | 13.85027 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 613 | 627 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 493 | 507 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 493 | 507 | 1.9E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 613 | 627 | 1.9E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 658 | 672 | 1.9E-6 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 145 | 190 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 151 | 170 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 254 | 291 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 865 | 995 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 896 | 969 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 866 | 886 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 254 | 274 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 550 | 573 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 171 | 190 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 432 | 451 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 74 | 95 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G37670.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_021750711.1 | WD repeat-containing protein 44-like [Chenopodium quinoa] | 0 |
| Q9XSC3 | WD repeat-containing protein 44 OS=Bos taurus OX=9913 GN=WDR44 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803N610 | WD_REPEATS_REGION domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology